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2012-02-22Mark reflections which were not found by update_partialities()Thomas White
2012-02-22Make post refinement go a LOT fasterThomas White
2012-02-22Don't waste time predicting reflections that don't appear in the patternThomas White
2012-02-22Fix the choice of "guiding" reflections for PRThomas White
2012-02-22Predict reflections with p<0.1Thomas White
2012-02-22Separate "refinable" and "scalable" conceptsThomas White
2012-02-22Don't select scalable reflections during post refinementThomas White
2012-02-22Don't forget to initialise counts to zeroThomas White
2012-02-22Remove useless function parameterThomas White
2012-02-22FussinessThomas White
2012-02-22PR gradient checkThomas White
2012-02-22Tidy upThomas White
2012-02-22Safeguard against silly unit cells in find_intersections()Thomas White
2012-02-22Tidy up dead code and formattingThomas White
2012-02-22FormattingThomas White
2012-02-22Added background subtraction and sigmaAndrew Martin
2012-02-22Correct handling of scalability listThomas White
2012-02-22Add an assert()Thomas White
2012-02-22FussinessThomas White
2012-02-22Get rid of "image.raw_reflections"Thomas White
2012-02-22Progress with post refinement...Thomas White
2012-02-22Remove unused variableThomas White
2012-02-22Work on post refinementThomas White
2012-02-22Add a nasty fudge factorThomas White
2012-02-22Set redundancy when simulating peaksThomas White
2012-02-22Do peak integration in double precisionThomas White
This avoids some integer overflow problems
2012-02-22Update copyright datesThomas White
2012-02-22Remove hardcoded resolution limit in find_intersections()Thomas White
2012-02-22First round of fallout from new geometry formatThomas White
2012-02-22s/min_x/min_fs/ and so onThomas White
2012-02-22Actually, don't ignore the central beamThomas White
It shouldn't appear anywhere on the detector anyway, so let's not make a special case of it.
2012-02-22Fix this laterThomas White
2012-02-22Work on making iteration workThomas White
2012-02-22Start work on binary treeThomas White
2012-02-22Remove solid angle correctionThomas White
It's never correct when using "bucket" integration, and always correct when using "pixel" integration, so don't give the option.
2012-02-22Remove unused includeThomas White
2012-02-22Fix integrate_peak() problems which caused incorrect peak positionsThomas White
2012-02-22Allow selected reflections to changeThomas White
This partially reverts a2611c8c2acf977eddac2d1a372760383d395da5.
2012-02-22Remove "profile_cutoff" (for now)Thomas White
2012-02-22Don't change which reflections are used for refinement until the next macrocycleThomas White
2012-02-22Fix post refinement maths and take clamping status into accountThomas White
2012-02-22Make sure coordinates are initialisedThomas White
2012-02-22Add divergenceThomas White
2012-02-22Add initial partiality estimateThomas White
2012-02-22Satisfactory peak locationThomas White
2012-02-22More geometry work (fixes a previous commit)Thomas White
2012-02-22facetron: Work on geometryThomas White
2012-02-22s/hit/cpeak/Thomas White
Avoid confusion over the use of the word 'hit'.
2012-02-22Estimate peak backgroundsThomas White
2012-02-22Fix commentThomas White