CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2017-09-27	Fix check for CBF files in event enumeration	Thomas White
	-1 means the check failed.
2017-09-21	Improve error message when using CBF files and a multi-event geometry	Thomas White

2017-05-02	Skeleton image file API	Thomas White

2017-03-08	Allow indexing system to store its own data, independently of indexing methods	Thomas White
	Previously, the indexing system passed all the information on to the indexing engines and then forgot about it. That made it difficult to do things like check the indexing solution after prediction refinement, because the target unit cell was unavailable. Now, the indexing system itself can keep some information. Of course, that information includes the private pointers for the indexing engines themselves. I took the opportunity to streamline things a little bit. The caller can now set up the indexing system in one step, without having to separately parse the names of the indexing methods. The caller no longer has to keep track of a separate array of methods, instead just one structure which contains everything.
2017-02-02	Cannot use stamp_response() here	Thomas White
	We have a pipe index (0 to n_read), not a process index (0 to n_proc). These are two separate lists, with no correspondence between them. See 7dbbfa4 for another fix related to this issue.
2017-02-02	indexamajig: Add ping mechanism to avoid timing out when trying lots of indexers	Thomas White

2017-01-12	indexamajig: Fix hanging on "Waiting for last patterns"	Thomas White

2016-08-16	indexamajig: Detect and kill hung worker processes	Thomas White

2016-08-16	Remove unused member	Thomas White

2016-03-14	Add SA_RESTART to signal handlers	Thomas White
	Fixes corrupted output when heavily multi-processing.
2016-03-01	indexamajig: Wall clock profiling	Thomas White

2015-12-13	indexamajig: Restart fgets() in pump_chunk() if interrupted by system call	Thomas White
	This fixes the occasional unterminated chunk found in the output.
2015-07-13	Fix racy queue filling	Thomas White

2015-07-13	Slow down the status updates	Thomas White

2015-07-13	Clean up semaphore on interrupt	Thomas White
	Necessary since we encourage users to interrupt indexamajig with Ctrl+C Also, generally improve the signal handling.
2015-07-13	Use named semaphores instead of unnamed	Thomas White

2015-07-13	indexamajig: Avoid forking while multithreaded	Thomas White
	Conflicts: src/im-sandbox.c
2015-07-13	Re-work im-sandbox	Thomas White
	... it certainly needed it.
2015-07-09	Tidy up error handling when given dodgy data locations	Thomas White

2015-06-25	Tidy up some small leaks and memory bugs	Thomas White

2015-06-23	s/MAP_ANONYMOUS/MAP_ANON/	Thomas White
	Needed for OSX compatability
2015-06-18	Replace semaphore with a mutex	Thomas White
	A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself...
2015-06-17	Use a POSIX semaphore for synchronising terminal access during indexing	Thomas White
	Nice side-effect: indexamajig -j and --int-diag can now be used together
2015-02-05	Remove --element option from inxexamajig	Valerio Mariani

2014-12-10	Further improvements to reading of events in worker processes	Thomas White

2014-12-10	Do not send the next filename if suspend/release occurs	Thomas White

2014-12-10	Improve detection of error conditions when reading events in worker processes	Thomas White

2014-12-10	Don't shut down worker process just because main process takes a while to ↵	Thomas White
	produce an event Reported by Takanori Nakane
2014-10-23	Fix a load of memory leaks	Thomas White

2014-10-23	Add serial numbers to chunks	Thomas White

2014-10-16	Fussiness	Thomas White

2014-09-24	Avoid a malloc() call	Thomas White

2014-09-24	Fussiness	Thomas White

2014-09-24	Move photon_energy to "geometry" file	Thomas White

2014-09-22	Beam file removal, part I	Thomas White

2014-09-05	Multi-event mode bug fixes	Valerio Mariani

2014-09-05	Multi-event mode	Valerio Mariani

2014-08-25	Report final indexing percentage	Thomas White

2014-07-24	Suspend indexing statistics while --int-diag is displaying	Thomas White

2014-05-22	Rationalise and document stream "open for write" functions	Thomas White
	A nice side-effect is that streams now only have one set of headers
2014-05-08	Strip out the "prepare_filename" rubbish	Thomas White

2013-10-10	indexamajig: Add --temp-dir	Thomas White

2013-08-26	Fix previous commit	Thomas White

2013-08-26	Display indexing yield as a percentage	Thomas White

2013-03-17	Fix race condition in reader thread	Thomas White
	I'm not sure what this line was doing. Hopefully just a "brain fart" from before.
2013-02-22	Fussiness	Thomas White

2013-02-22	If no progress, still check if everything's finished or not	Thomas White

2013-02-22	Avoid fclose(NULL)	Thomas White

2013-02-22	Avoid the use of stdio for writing to final stream	Thomas White
	Something really weird goes on when using stdio
2013-02-22	Keep Valgrind quiet	Thomas White