| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2017-07-21 | Fix option names for TakeTwo parameters | Thomas White | |
| 2017-07-20 | Change units for TakeTwo parameters | Thomas White | |
| 2017-07-07 | Convert angle_tol to radians | Thomas White | |
| 2017-07-06 | indexamajig: Add TakeTwo-specific options | Thomas White | |
| 2017-06-27 | indexamajig: Add --no-non-hits-in-stream | Thomas White | |
| 2017-06-21 | indexamajig: Add --min-peaks (basic hitfinder functionality) | Thomas White | |
| 2017-05-02 | Skeleton image file API | Thomas White | |
| 2017-03-31 | Offset peak locations from HDF5 or CXI files by 0.5,0.5 | Thomas White | |
| CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset. | |||
| 2017-03-24 | indexamajig: Format --help and fix typos | Thomas White | |
| 2017-03-24 | Merge branch 'valerio/peakfinder8' | Thomas White | |
| 2017-03-10 | Fixed a couple of bugs reported by Tom | Valerio Mariani | |
| 2017-03-10 | Peakfinder8 in CrystFEL. Same results as Anton's Cheetah implementation | Valerio Mariani | |
| 2017-03-08 | Allow indexing system to store its own data, independently of indexing methods | Thomas White | |
| Previously, the indexing system passed all the information on to the indexing engines and then forgot about it. That made it difficult to do things like check the indexing solution after prediction refinement, because the target unit cell was unavailable. Now, the indexing system itself can keep some information. Of course, that information includes the private pointers for the indexing engines themselves. I took the opportunity to streamline things a little bit. The caller can now set up the indexing system in one step, without having to separately parse the names of the indexing methods. The caller no longer has to keep track of a separate array of methods, instead just one structure which contains everything. | |||
| 2016-08-10 | Allow peak table location to be given in geometry file | Thomas White | |
| 2016-03-01 | indexamajig: Wall clock profiling | Thomas White | |
| 2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
| Adds yet another indexing option... | |||
| 2015-11-27 | indexamajig: Write target unit cell into stream | Thomas White | |
| 2015-11-17 | Make integration WITHOUT gradient background the default | Thomas White | |
| 2015-11-17 | Make gradient background fitting optional | Thomas White | |
| 2015-09-15 | Implement Felix Indexer | Kenneth Beyerlein | |
| 2015-08-27 | indexamajig: Update docs | Thomas White | |
| 2015-07-23 | indexamajig: Peak detection method must be parsed before checking peak path | Thomas White | |
| 2015-07-21 | indexamajig: Tidy up option handling | Thomas White | |
| 2015-07-13 | Slow down the status updates | Thomas White | |
| 2015-06-25 | Tidy up some small leaks and memory bugs | Thomas White | |
| 2015-06-17 | Use a POSIX semaphore for synchronising terminal access during indexing | Thomas White | |
| Nice side-effect: indexamajig -j and --int-diag can now be used together | |||
| 2015-04-20 | indexamajig: Add --no-refine | Thomas White | |
| 2015-02-20 | indexamajig: Intelligently set default peak path | Thomas White | |
| 2015-02-16 | indexamajig: --peaks=cxi instead of --peaks=hdf5 --cxi-hdf5-peaks | Thomas White | |
| 2015-02-12 | indexamajig: Add --fix-{profile-radius,bandwidth,divergence} | Thomas White | |
| 2015-02-05 | Remove --element option from inxexamajig | Valerio Mariani | |
| 2014-12-14 | Fussiness | Thomas White | |
| 2014-12-14 | Read cxidb peak info | Valerio Mariani | |
| 2014-11-09 | Add warnings to everything which used to take a beam file | Thomas White | |
| 2014-10-27 | indexamajig: Warning if --push-res is used without rescut | Thomas White | |
| 2014-10-24 | indexamajig: Fix --version | Thomas White | |
| 2014-10-23 | Fix an error message | Thomas White | |
| 2014-10-23 | Fix a load of memory leaks | Thomas White | |
| 2014-09-22 | Beam file removal, part I | Thomas White | |
| 2014-09-19 | Introduce CrystFEL unit cell files | Thomas White | |
| 2014-08-13 | indexamajig: Add --highres | Thomas White | |
| 2014-07-21 | Copy geometry file into stream | Valerio Mariani | |
| 2014-06-20 | indexamajig: Add --peak-radius | Thomas White | |
| 2014-05-22 | Rationalise and document stream "open for write" functions | Thomas White | |
| A nice side-effect is that streams now only have one set of headers | |||
| 2014-05-22 | Fix permissions of newly created stream files | Thomas White | |
| The user's umask should prevent all the streams from being (eg) world writable. | |||
| 2014-05-21 | Added reporting of version number to all program and stream file | Valerio Mariani | |
| 2014-05-08 | Strip out the "prepare_filename" rubbish | Thomas White | |
| 2014-04-09 | Remove vestigial "closer-peak" option | Thomas White | |
| 2014-04-08 | indexamajig: Add --push-res | Thomas White | |
| 2014-03-26 | indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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