CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	Fix many small memory leaks	Thomas White

2012-02-22	indexamajig: Remove "--check-sanity" option	Thomas White
	Why wouldn't you want sane results?
2012-02-22	Remove solid angle correction	Thomas White
	It's never correct when using "bucket" integration, and always correct when using "pixel" integration, so don't give the option.
2012-02-22	Remove --write-drx option and simplify code	Thomas White

2012-02-22	Update docs	Thomas White

2012-02-22	Implement "multi-indexing"	Thomas White

2012-02-22	added fake mosflm support (runs dirax)	Richard Kirian

2012-02-22	indexamajig: Add missing include	Thomas White

2012-02-22	Tighter symmetry check	Thomas White

2012-02-22	Use symmetry when simulating on the GPU	Thomas White

2012-02-22	Use symmetry when simulating (on the CPU only)	Thomas White

2012-02-22	indexamajig: Add --gpu-dev option	Thomas White

2012-02-22	Handle multiple GPUs	Thomas White

2012-02-22	indexamajig: Take minimum gradient on command line	Thomas White

2012-02-22	Zap quats	Thomas White
	The "orientation" quaternion should not rotate the Ewald sphere, but the crystal. This cleans things up a little, removing "orientation" from "struct image".
2012-02-22	Update docs and --help	Thomas White

2012-02-22	indexamajig: Add other cell reduction possibilities, and remove --no-match	Thomas White

2012-02-22	indexamajig: Remove the need to rewind(stdin)	Thomas White

2012-02-22	Take nominal photon energy from file	Thomas White

2012-02-22	s/hit/cpeak/	Thomas White
	Avoid confusion over the use of the word 'hit'.
2012-02-22	indexamajig: Bodge round inability to rewind(stdin)	Thomas White

2012-02-22	indexamajig: Don't fclose(stdout)	Thomas White

2012-02-22	Tidy up memory leaks	Thomas White

2012-02-22	indexamajig: Use new thread pool	Thomas White

2012-02-22	'Filename' doesn't need to be const	Thomas White

2012-02-22	indexamajig: Improve --help	Thomas White

2012-02-22	indexamajig: Option of getting peaks from the HDF5 file	Thomas White

2012-02-22	indexamajig: Newline belongs in output stream as well	Thomas White

2012-02-22	indexamajig: Command line note goes in output stream	Thomas White

2012-02-22	Put I0 and found peaks in stream	Thomas White

2012-02-22	indexamajig: Take output stream as a command line parameter	Thomas White

2012-02-22	indexamajig: Rework counting	Thomas White

2012-02-22	Make it the default to do the saturation correction	Thomas White

2012-02-22	indexamajig: Write command line to stdout	Thomas White
	This helps later archaeology
2012-02-22	compare_hkl: Reject reflections with low SNR	Thomas White

2012-02-22	Add the possibility to use a circular (instead of 'crystallographic') ↵	Thomas White
	integration domain
2012-02-22	facetron: Add options	Thomas White

2012-02-22	indexamajig: Add --no-closer-peak option	Thomas White

2012-02-22	Fix unit cell point group memory leak	Thomas White

2012-02-22	Free indexing resources at the end	Thomas White

2012-02-22	indexamajig: Implement --no-check-prefix	Thomas White

2012-02-22	indexamajig: Check --prefix and second-guess the user if it seems appropriate	Thomas White
	I know this is kind of naughty, but this is one of the #1 failure modes right now.
2012-02-22	indexamajig: More fussing over --help	Thomas White

2012-02-22	indexamajig: Get peak threshold on command line	Thomas White

2012-02-22	indexamajig: Reformat --help	Thomas White

2012-02-22	Move -D_GNU_SOURCE to a better place	Thomas White

2012-02-22	indexamajig: Don't ignore first item (can't rewind() stdin...)	Thomas White

2012-02-22	Use detector geometry when generating templates	Thomas White
	Also, add progress bar.
2012-02-22	indexamajig: Prepare for other indexing methods which need initial setup	Thomas White

2012-02-22	indexamajig: Avoid re-counting images when the threads are joined	Thomas White