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These flags weren't orthogonal at all, which was turning some routines
into spaghetti-code.
It's still possible to avoid read/write of peak lists, reflection data
or image data. But that's it.
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It makes no sense for a different DataTemplate to be used for every
frame in a stream. And this way makes everything much easier for users
ot the API.
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Also, this fixes some incorrect headers and adds --version flags to
programs which didn't yet have them.
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The only place this is used is in geoptimiser, to get the
average_camera_length, itself a very bad solution.
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These values were inconsistently set by different parts of the code,
e.g. different peak search methods. num_saturated_peaks was even set
during final integration. Now, the peak count is taken from the
ImageFeatureList, so it's authoritative.
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spectrum.
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This will need a separate way to create the official releases
(which shouldn't have Git revisions attached)
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groups
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