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Analogous fixes to those done for partial_sim in 0effb5f83daf0317aa97a1cd10e7708551a25201.
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These flags weren't orthogonal at all, which was turning some routines
into spaghetti-code.
It's still possible to avoid read/write of peak lists, reflection data
or image data. But that's it.
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It makes no sense for a different DataTemplate to be used for every
frame in a stream. And this way makes everything much easier for users
ot the API.
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Also, this fixes some incorrect headers and adds --version flags to
programs which didn't yet have them.
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record_image has been moved to pattern_sim.c
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spectrum.
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This will need a separate way to create the official releases
(which shouldn't have Git revisions attached)
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This trips *everyone* up.
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groups
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Since nothing writes in this modified format (including fs, ss and pn), it
makes no sense to be able to read it.
This commit reverts a small part of c194bf77.
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