CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2014-01-20	RNG overhaul	Thomas White
	Previously, we were using random(), which is really really bad.
2014-01-20	pattern_sim: Overhaul and add SASE spectrum simulation	Thomas White

2013-01-10	Handle '?' return value from getopt_long()	Thomas White

2012-12-14	Beam and detector geometry don't need to be copied	Thomas White
	The did when this was all done with threads, but with separate processes each worker has its own copy of the structure already. It can be updated after every image and freed at the end.
2012-12-13	more user options for beam photon energy	Chun Hong Yoon

2012-10-02	Move unit cell utility stuff to separate module	Thomas White

2012-09-04	Fix widespread bug-hiding problem with command line argument handling	Thomas White

2012-06-28	pattern_sim: Use hdf5_write() instead of hdf5_write_image()	Thomas White
	This means that the wavelength gets put into the HDF5 file.
2012-06-28	Restore bandwidth and subsampling to pattern_sim	Thomas White

2012-05-30	Formatting	Thomas White

2012-03-09	Update licence notices in line with recommendations from TT	Thomas White

2012-03-06	Rename old array functions to get them out of the way of API consistency	Thomas White

2012-03-05	pattern_sim: Remove unnecessary paragraph from --help	Thomas White

2012-03-05	pattern_sim: Remove --simulation-details, obsoleted by manpage	Thomas White

2012-02-24	Remove I0 stuff	Thomas White
	Nothing used it, and it can't really be useful for anything. Use 'osf' instead.
2012-02-22	GPLv3 boilerplate comments	Thomas White

2012-02-22	Move the "indexed reflection array" thing to where it can't do any harm	Thomas White

2012-02-22	pattern_sim: Write powder at end of simulation series as well	Thomas White

2012-02-22	Formatting	Thomas White

2012-02-22	pattern_sim.c: check for NULL pointer	Richard Kirian

2012-02-22	Missed this one	Thomas White

2012-02-22	Get rid of pattern_sim --near-bragg	Thomas White

2012-02-22	Banish find_projected_peaks()	Thomas White

2012-02-22	Make background subtraction optional	Thomas White

2012-02-22	Remove old reflections.h	Thomas White

2012-02-22	Remove all remaining PDB rendering stuff	Thomas White

2012-02-22	Update copyright dates	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	New stream writing	Thomas White

2012-02-22	First part of stream rework	Thomas White

2012-02-22	setup_gpu() does not need an image	Thomas White

2012-02-22	Remove water simulation stuff	Thomas White
	It's not really useful - our dominant background is from elsewhere
2012-02-22	s/min_x/min_fs/ and so on	Thomas White

2012-02-22	Make find_projected_peaks() behave like find_intersections()	Thomas White
	Also make sure output_intensities() deals only with integration
2012-02-22	Start work on binary tree	Thomas White

2012-02-22	Remove solid angle correction	Thomas White
	It's never correct when using "bucket" integration, and always correct when using "pixel" integration, so don't give the option.
2012-02-22	Tighter symmetry check	Thomas White

2012-02-22	Use symmetry when simulating on the GPU	Thomas White

2012-02-22	Use symmetry when simulating (on the CPU only)	Thomas White

2012-02-22	pattern_sim: Check validity of numbers passed on command line	Thomas White

2012-02-22	pattern_sim: Add --min-size and --max-size options	Thomas White

2012-02-22	pattern_sim: Update --help	Thomas White

2012-02-22	Handle multiple GPUs	Thomas White

2012-02-22	Zap quats	Thomas White
	The "orientation" quaternion should not rotate the Ewald sphere, but the crystal. This cleans things up a little, removing "orientation" from "struct image".
2012-02-22	pattern_sim: Fix memory leaks	Thomas White

2012-02-22	pattern_sim: Add --really-random option	Thomas White

2012-02-22	pattern_sim: Fussiness	Thomas White

2012-02-22	pattern_sim: Make random numbers really random	Thomas White

2012-02-22	Read beam parameters from file (where appropriate)	Thomas White

2012-02-22	indexamajig: Take output stream as a command line parameter	Thomas White