CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	Symmetry stuff	Thomas White

2012-02-22	Compiles (with warnings)	Thomas White

2012-02-22	Use new Kabsch algorithm for faster scaling	Thomas White

2012-02-22	process_hkl: Clean up --help	Thomas White
	This option was removed a long time ago.
2012-02-22	Tidy up integration and ESD calculation, and pass checks	Thomas White

2012-02-22	Added background subtraction and sigma	Andrew Martin

2012-02-22	process_hkl: Initialise image.det to NULL to avoid updating the geometry in ↵	Thomas White
	read_chunk()
2012-02-22	Fix up stream error handling	Thomas White

2012-02-22	process_hkl: Calculate sigmas correctly	Thomas White

2012-02-22	process_hkl: Don't require unit cell	Thomas White

2012-02-22	Remove old reflections.h	Thomas White

2012-02-22	Remove all remaining PDB rendering stuff	Thomas White

2012-02-22	process_hkl: Fix symmetry	Thomas White

2012-02-22	Fix memory leaks	Thomas White

2012-02-22	WIP on new stream format in process_hkl	Thomas White

2012-02-22	process_hkl: Fix options	Thomas White

2012-02-22	Use correct accessor type for ESD lists	Thomas White

2012-02-22	Fix stability of SNRs	Thomas White

2012-02-22	process_hkl: Finish progress bar properly when using --stop-after	Thomas White

2012-02-22	process_hkl: Implement Rick's ESD calculation	Thomas White

2012-02-22	process_hkl: Fix write past array bounds when doing histogram	Thomas White

2012-02-22	process_hkl: Take input ("apparent") symmetry on command line	Thomas White

2012-02-22	process_hkl: Fix command line arguments	Thomas White

2012-02-22	Read beam parameters from file (where appropriate)	Thomas White

2012-02-22	process_hkl: Fix comment	Thomas White

2012-02-22	process_hkl: Fix a serious problem	Thomas White

2012-02-22	process_hkl: Typo	Thomas White

2012-02-22	process_hkl: Fix counting	Thomas White

2012-02-22	Move stream handling functions to a separate module	Thomas White

2012-02-22	process_hkl: Add intensity per peak scaling	Thomas White

2012-02-22	process_hkl: Add another type of scaling	Thomas White

2012-02-22	compare_hkl: Reject reflections with low SNR	Thomas White

2012-02-22	process_hkl: Initialise and free unit cell correctly	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	s/Rrim/Rmeas/	Thomas White

2012-02-22	Add lots more FoMs	Thomas White

2012-02-22	process_hkl: Fix progress bar	Thomas White

2012-02-22	process_hkl: Make scaling aware of symmetry	Thomas White

2012-02-22	process_hkl: Add --reference and --outstream options	Thomas White

2012-02-22	Fix unit cell point group memory leak	Thomas White

2012-02-22	process_hkl: Add --start-after option	Thomas White

2012-02-22	process_hkl: Add merging figures of merit	Thomas White

2012-02-22	process_hkl: Increase histogram bin size	Thomas White

2012-02-22	process_hkl: Generate intensity histograms	Thomas White

2012-02-22	process_hkl: Don't resolve twins/inversion unless requested	Thomas White

2012-02-22	process_hkl: Don't set counts to 1	Thomas White

2012-02-22	process_hkl: Don't divide by counts for --max-only	Thomas White

2012-02-22	process_hkl: Fix merging so that it works	Thomas White

2012-02-22	Reduce the scope of "count"	Thomas White
	Lists of counts had pervaded every corner of CrystFEL, being used as markers for the presence of reflections. Now we have a better way of doing this, the ReflItemList, and few parts of the suite apart from process_hkl have any business knowing how many observations were made of a particular reflection.
2012-02-22	process_hkl: Restructure and remove all intensity analysis stuff	Thomas White