| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2017-02-02 | indexamajig: Add ping mechanism to avoid timing out when trying lots of indexers | Thomas White | |
| 2016-03-01 | indexamajig: Wall clock profiling | Thomas White | |
| 2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
| This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
| 2015-12-18 | Saturation map fixes | Thomas White | |
| 2015-10-05 | process_image(): Remove image->data | Thomas White | |
| 2015-07-13 | Re-work im-sandbox | Thomas White | |
| ... it certainly needed it. | |||
| 2015-07-09 | indexamajig: Fix noise filter backup/restore | Thomas White | |
| 2015-06-18 | Replace semaphore with a mutex | Thomas White | |
| A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself... | |||
| 2015-06-17 | Use a POSIX semaphore for synchronising terminal access during indexing | Thomas White | |
| Nice side-effect: indexamajig -j and --int-diag can now be used together | |||
| 2015-04-28 | Remove unnecessary rejection tests | Thomas White | |
| 2015-04-20 | Tweak rejection | Thomas White | |
| 2015-04-20 | Add a simple rejection criterion to the prediction refinement | Thomas White | |
| 2015-04-20 | indexamajig: Reset indexing method if all crystals fail integration | Thomas White | |
| 2015-04-20 | indexamajig: Add --no-refine | Thomas White | |
| 2015-04-20 | Refine detector position in prediction refinement | Thomas White | |
| 2015-04-20 | refine_{radius,prediction}: unite common code (pair_peaks), avoid ↵ | Thomas White | |
| preliminary integration round | |||
| 2015-04-20 | Remove debugging statements | Thomas White | |
| 2015-04-20 | Record profile radius before and after refinement | Thomas White | |
| 2015-04-20 | Throw out crystals which could not be refined | Thomas White | |
| 2015-04-20 | Tweak weightings and cutoffs | Thomas White | |
| 2015-04-20 | Add prediction refinement | Thomas White | |
| 2015-04-01 | Initialise indexed_by to INDEXING_NONE | Thomas White | |
| Not entirely sure how this was missed for so long. | |||
| 2015-02-20 | indexamajig: Show event ID if there are implausible reflections | Thomas White | |
| 2015-02-20 | indexamajig: Take a copy of the geometry structure | Thomas White | |
| There are already things which alter this structure during processing, and probably more to come. Taking a copy avoids problems down the line and fixes a serious bug when using coffset and a fixed clen. | |||
| 2015-02-18 | Fix profile radius determination | Thomas White | |
| 2015-02-16 | indexamajig: --peaks=cxi instead of --peaks=hdf5 --cxi-hdf5-peaks | Thomas White | |
| 2015-02-12 | Increase max radius to 0.02e9 m^-1 | Thomas White | |
| 2015-02-12 | indexamajig: Add --fix-{profile-radius,bandwidth,divergence} | Thomas White | |
| 2015-02-12 | Improved determination of profile radius | Thomas White | |
| 2015-02-10 | Formatting and comments | Thomas White | |
| 2014-12-14 | Fussiness | Thomas White | |
| 2014-12-14 | Read cxidb peak info | Valerio Mariani | |
| 2014-12-09 | Capitalise all warnings | Thomas White | |
| 2014-12-09 | Update warning | Thomas White | |
| 2014-12-02 | Count very strong reflections instead of intensity when calculating profile ↵ | Thomas White | |
| radius | |||
| 2014-11-28 | indexamajig: Only do int-diag on second integration pass | Thomas White | |
| 2014-11-28 | indexamajig: Report implausibly negative reflections only after final ↵ | Thomas White | |
| integration | |||
| 2014-11-26 | Formatting | Thomas White | |
| 2014-11-24 | Fixed stream I/O across different versions | Valerio Mariani | |
| 2014-10-23 | Fix a load of memory leaks | Thomas White | |
| 2014-10-23 | Add serial numbers to chunks | Thomas White | |
| 2014-10-06 | Automatic determination of profile radius | Thomas White | |
| 2014-09-30 | Cell vector gradients for SCSphere, plus general rationalisation | Thomas White | |
| 2014-09-25 | WIP on prediction | Thomas White | |
| 2014-09-25 | Remove "sphere", "thin" and "gaussian" partiality models, add "scgaussian" | Thomas White | |
| 2014-09-24 | Set (hardcoded) "beam" parameters | Thomas White | |
| 2014-09-22 | Beam file removal, part I | Thomas White | |
| 2014-09-12 | Formatting | Thomas White | |
| 2014-09-05 | Multi-event mode | Valerio Mariani | |
| 2014-09-05 | Moved opening of file inside hdf5_read function for better encapsulation | Valerio Mariani | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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