Age | Commit message (Collapse) | Author | |
---|---|---|---|
2018-05-30 | Use only one min-snr option | Thomas White | |
2018-05-30 | Changed parameter window-radius -> local-bg-radius | Yaroslav Gevorkov | |
2018-05-30 | Changed sig_fac to min_snr | Yaroslav Gevorkov | |
2018-05-24 | Update authorship and copyright dates | Thomas White | |
2018-05-24 | Add "peakfinder9" | Yaroslav Gevorkov | |
2018-02-27 | indexamajig: Add --overpredict | Thomas White | |
2017-10-12 | indexamajig: Simplify Felix options | Thomas White | |
2017-07-06 | indexamajig: Add TakeTwo-specific options | Thomas White | |
2017-06-27 | indexamajig: Add --no-non-hits-in-stream | Thomas White | |
2017-06-21 | indexamajig: Add --min-peaks (basic hitfinder functionality) | Thomas White | |
2017-05-02 | Skeleton image file API | Thomas White | |
2017-03-31 | Offset peak locations from HDF5 or CXI files by 0.5,0.5 | Thomas White | |
CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset. | |||
2017-03-24 | Merge branch 'valerio/peakfinder8' | Thomas White | |
2017-03-11 | Removed unused iarg | Valerio Mariani | |
2017-03-10 | Peakfinder8 in CrystFEL. Same results as Anton's Cheetah implementation | Valerio Mariani | |
2017-03-08 | Allow indexing system to store its own data, independently of indexing methods | Thomas White | |
Previously, the indexing system passed all the information on to the indexing engines and then forgot about it. That made it difficult to do things like check the indexing solution after prediction refinement, because the target unit cell was unavailable. Now, the indexing system itself can keep some information. Of course, that information includes the private pointers for the indexing engines themselves. I took the opportunity to streamline things a little bit. The caller can now set up the indexing system in one step, without having to separately parse the names of the indexing methods. The caller no longer has to keep track of a separate array of methods, instead just one structure which contains everything. | |||
2016-03-01 | indexamajig: Wall clock profiling | Thomas White | |
2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
Adds yet another indexing option... | |||
2015-09-15 | Implement Felix Indexer | Kenneth Beyerlein | |
2015-07-13 | Re-work im-sandbox | Thomas White | |
... it certainly needed it. | |||
2015-06-18 | Replace semaphore with a mutex | Thomas White | |
A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself... | |||
2015-06-17 | Use a POSIX semaphore for synchronising terminal access during indexing | Thomas White | |
Nice side-effect: indexamajig -j and --int-diag can now be used together | |||
2015-04-20 | indexamajig: Add --no-refine | Thomas White | |
2015-02-16 | indexamajig: --peaks=cxi instead of --peaks=hdf5 --cxi-hdf5-peaks | Thomas White | |
2015-02-12 | indexamajig: Add --fix-{profile-radius,bandwidth,divergence} | Thomas White | |
2015-02-05 | Remove --element option from inxexamajig | Valerio Mariani | |
2014-12-14 | Fussiness | Thomas White | |
2014-12-14 | Read cxidb peak info | Valerio Mariani | |
2014-10-23 | Add serial numbers to chunks | Thomas White | |
2014-09-05 | Multi-event mode | Valerio Mariani | |
2014-08-13 | indexamajig: Add --highres | Thomas White | |
2014-07-24 | Suspend indexing statistics while --int-diag is displaying | Thomas White | |
2014-06-20 | indexamajig: Add --peak-radius | Thomas White | |
2014-04-09 | Remove vestigial "closer-peak" option | Thomas White | |
2014-04-08 | indexamajig: Add --push-res | Thomas White | |
2014-03-26 | indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr | Thomas White | |
2013-11-23 | indexamajig: Add --int-diag | Thomas White | |
2013-10-10 | indexamajig: Add --temp-dir | Thomas White | |
2013-05-30 | indexamajig: Get rid of --min-integration-snr | Thomas White | |
This functionality belongs in process_hkl. | |||
2013-05-27 | Initial integration stuff | Thomas White | |
2013-03-11 | indexamajig: Add --median-filter | Thomas White | |
2013-02-22 | Move processing pipeline to separate file | Thomas White | |