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2021-07-21Reduce variable scope where possibleThomas White
2021-07-21Make sure that memory gets freed on realloc failureThomas White
2021-07-21Add missing cleanup on error pathsThomas White
2021-07-20GUI: Use format stringThomas White
2021-07-16Rename DST_* to DATA_SOURCE_TYPE_*Thomas White
On some systems, this conflicts with DST_NONE in sys/time.h.
2021-07-15pinkindexer_used: Handle methods=NULLThomas White
In this case, return false because PinkIndexer is never in the list of automatically-chosen indexers.
2021-07-15GUI: Remove extra layer of relative pathsThomas White
Not needed any more.
2021-07-15GUI: Run all jobs with same CWD as GUI itselfThomas White
This requires changing all the paths to relative ones. Previously, the jobs ran with their CWDs set to the corresponding "result" folder. The trouble is, this breaks everything that uses a relative location: image filenames, mask/satmap files referenced by the geometry, etc. Note that this change also means that the temporary folders ("indexamajig.XXX") are now produced in the top-level working directory. Eventually, a GUI option should be added to allow these folders to be put somewhere better (i.e. somewhere fast). Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/44
2021-07-15CrystFELIndexingOpts: Add tooltips for PinkIndexer optionsThomas White
2021-07-14GUI: Add PinkIndexer options to command lineThomas White
2021-07-14GUI: Get/set PinkIndexer optionsThomas White
2021-07-14GUI: Add PinkIndexer options to 'struct index_params'Thomas White
2021-07-14CrystFELIndexingOpts: Add PinkIndexer optionsThomas White
2021-07-14Add get_combo_idThomas White
2021-07-14GUI: Add placeholders for advanced indexer optionsThomas White
2021-07-14Make all the indexer-specific option structures non-opaqueThomas White
Making them opaque seemed like a nice idea, because all the indexers could take care of their own command-line arguments. However, it doesn't work at all when indexing is run via the API.
2021-07-13GUI: Reject infinite resolution limits for FoMThomas White
2021-07-12GUI: Add Tools->Jump to frameThomas White
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/41
2021-07-12GUI: Update the "About" boxThomas White
2021-07-12GUI: Add --wavelength-estimate and --camera-length-estimateThomas White
Only when using PinkIndexer. Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/25
2021-07-09pattern_sim: Fix typo in --helpThomas White
2021-07-06SLURM: Show the real error message if job can't be submittedThomas White
2021-06-23GUI: Avoid writing '(null)' to project fileThomas White
The problem is, '(null)' is not NULL.
2021-06-23CrystFELSymmetrySelector: Set have_pg when PG is set via APIThomas White
2021-06-23GUI: Swap Close/Calculate buttons in FoM windowThomas White
This makes it consistent with all the other windows.
2021-06-23GUI: Fix a tooltipThomas White
2021-06-22GUI: Fix paths to streams for merging and ambigatorThomas White
They need to be prefixed with "../" because they are in a different folder.
2021-06-22CrystFELImageView: Adjust threshold for showing box centresThomas White
I find that starting to show centres at a higher magnification level makes it easier to distinguish the centre markers from bright pixels.
2021-06-22GUI: Remove old debugging watchpointThomas White
2021-06-22CrystFELImageView: Rearrange reflection coloursThomas White
Smaller numbers of crystals are more common, so it's better for the second crystal to be something very distinct from the peak search colour.
2021-06-17GUI: Add a tooltipThomas White
2021-06-16GUI: Warn if chunk can't be loaded from streamThomas White
2021-05-28GUI: Store relative paths of resultsThomas White
This allows project folders to be relocated more easily. At the same time, I fixed the weird ownership semantics of add_indexing_result and add_merge_result. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/31
2021-05-28Pass errors back when retrieving values for wavelength etcThomas White
Big improvement on just sending NAN back. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/37
2021-05-25Fix dummy prototype for im_zmq_connectThomas White
2021-05-19GUI: Add button to reset FoM resolution range to entire dataThomas White
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/11
2021-05-19GUI: Increase size of FoM min resolution boxThomas White
2021-05-17Resolve FIXMEs and TODOsThomas White
Prompted by the article linked below, for each FIXME/TODO I've either referenced an issue in the tracker, or removed it if it's not worth fixing. https://schleiss.io/plotting-source-code-todos-for-open-source-projects
2021-05-17GUI: Improve error handling for default_projectThomas White
2021-05-11indexamajig: Put cell tolerances and pk/int radii into separate objectsThomas White
Rationale: it makes the JSON structure a bit more logical, and enables things like the following: set_of_params_1.integration.radii == set_of_params_2.integration.radii params.peaksearch.radii == params.integration.radii Previously, these would have required multiple comparisons.
2021-05-11GUI: Fix loading of merging parameters from project fileThomas White
Apparently, I can't count.
2021-05-11GUI: Fix checkbox logic in CrystFELMergeOptsThomas White
2021-05-11GUI: Ensure that streams get re-scanned after job terminationThomas White
Previously, they would not get scanned because no job was running. We need one more scan after a job exits to make sure everything is up to date.
2021-05-11Add the 'real' implementation of CrystFELSymmetrySelectorThomas White
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/13
2021-05-11Add set_combo_id()Thomas White
2021-05-07Add deselect_when_active()Thomas White
2021-05-07GUI: Add missing initialisation/load/save for ambi.backendThomas White
2021-05-05indexamajig: Add --zmq-requestThomas White
This (re-)adds the ability to get data via a request/reply socket. See afcb7b568947c for when it was removed.
2021-05-05indexamajig: Add a missing breakThomas White
This fixes --threshold when --zmq-subscribe is used.
2021-04-30GUI: Take optional stream on command lineThomas White
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/12
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