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2013-11-23Merge branch 'master' of ssh://git.bitwiz.org.uk/crystfelThomas White
2013-11-23render_hkl: Add --res-ringThomas White
2013-11-23get_hkl: Fix symmetric expansionThomas White
2013-11-22Use getcwd() instead of get_current_dir()Thomas White
2013-11-21compare_hkl: Add Rano and Rano/RsplitThomas White
2013-11-11process_hkl: Add warnings about --min-snrThomas White
2013-11-07Merge branch 'master' of ssh://git.bitwiz.org.uk/crystfelThomas White
2013-11-06check_hkl: Add --shell-fileThomas White
2013-11-06get_hkl: Add anisotropic truncationThomas White
2013-10-31process_hkl: Reject reflections with sigma=nan if --min-snr is usedThomas White
2013-10-19hdfsee: Show panel name even when no feature clickedThomas White
2013-10-11Add solve_svd_noscale()Thomas White
2013-10-11partialator: Initialise n_filt to zeroThomas White
2013-10-11partialator: Exclude weak reflections from refinementThomas White
2013-10-11partial_sim: Show overall numbersThomas White
2013-10-10indexamajig: Add --temp-dirThomas White
2013-10-08Read scalar values from HDF5 files as 0d arraysThomas White
Historically, scalar values have been represented in our data files as 1d arrays with size=1. Now they are (more correctly) written as 0d arrays. This change allows CrystFEL to read both.
2013-09-20partial_sim: Fix racy lockingThomas White
2013-09-19hdfsee: Use beam parameters file (--beam option)Thomas White
2013-09-13Stop PR when mean change in partiality is smallThomas White
2013-09-13Debugging/verbosity tweaksThomas White
2013-09-13partialator: Debugging stuffThomas White
2013-09-13partialator: Use read/write lockThomas White
2013-09-13partial_sim: Use read/write lockThomas White
2013-09-13Add INDEXING_SIMULATION for streams made by partial_simThomas White
2013-09-04hdfsee: Add accelerators for "Show features" and "Resolution rings"Thomas White
2013-08-26Fix previous commitThomas White
2013-08-26Display indexing yield as a percentageThomas White
2013-08-20process_hkl: Fix --histogramThomas White
List of values now expands as necessary Values are no longer double counted when using --scale
2013-08-20get_hkl: Add --cutoff-angstromsThomas White
2013-08-12Improve show_matrix_eqn()Thomas White
2013-08-08render_hkl: Fix it once and for allThomas White
2013-08-01Count filtered eigenvaluesThomas White
2013-08-01Use a struct to contain information for scaling reportThomas White
2013-08-01Count filtered eigenvaluesThomas White
2013-08-01Fix Lorentz gradientThomas White
2013-08-01Add test for gradient of Lorentz factor (as well as partiality)Thomas White
2013-08-01Fix previous commitThomas White
2013-07-31Flag crystals as "not refined" if SVD failsThomas White
2013-07-31Refine divergence as wellThomas White
2013-07-31Rescale the normal equations before attempting to solveThomas White
This makes the equations insensitive to the units of the parameters being refined, e.g. divergence is measured in radians whereas cell parameters are measured in m^-1, so their magnitudes are very different.
2013-07-31Use the correct reference list for selectionThomas White
2013-07-31Tweak rejection criteriaThomas White
2013-07-31Count reflections gained and lost during initial partiality calculationThomas White
2013-07-31Count number of "dud" crystals each iteration, not just at the endThomas White
2013-07-31Tweak error pathThomas White
2013-07-31Require scaling convergence to 5%, not 1%Thomas White
2013-07-31Revert refinement step if too many reflections are lostThomas White
2013-07-31partialator: New convergence criterion for scalingThomas White
Instead of stopping iteration when the absolute value of any scaling factor changes by more than a certain (small) amount, calculate the ratios of the scaling factors to their previous values, and stop when no scaling factor changes by more than 1% compared to the mean ratio. This method is robust against "drifting" of the scale factors when the partiality estimates are poor.
2013-07-31hdfsee: Show simple rings even if not using detector geometryThomas White