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2019-03-11cell_tool: Implement --cell-choicesThomas White
2019-03-11cell_tool: Add --transformThomas White
2019-03-11Keep track of the "un-centering" matrix, as well as the "centering"Thomas White
This makes it easy to reverse the transformation, if required, which it is when comparing centered cells.
2019-03-11New way of doing cell comparisons, similar to match_cell()Thomas White
2019-03-11Fix tolerances (again)Thomas White
2019-03-11Consider fractional cell lengths during comparisonThomas White
This is WAY too slow. Need another algorithm.
2019-03-11cell_tool --find-ambi: Work without -yThomas White
It's not super-helpful, but the manual say it works, so...
2019-03-11Be clear about whether functions need rational or integer transformationsThomas White
2019-03-11Use IntegerMatrix for all unit cell transformationsThomas White
Get rid of UnitCellTransformation, a thin wrapper which didn't do anything.
2019-03-11get_hkl --reindex: Check that the user provides only one reindexing operationThomas White
2019-03-11cell_tool --rings: Add --highresThomas White
2019-03-11cell_tool: Fix length tolerance unitsThomas White
2019-03-11Change horribly confusing names of unit cell comparison functionsThomas White
cells_are_similar -> compare_cell_parameters_and_orientation compare_cells -> compare_reindexed_cell_parameters_and_orientation cell_tool.c:cells_the_same -> cellutils.c:compare_cell_parameters All comparisons now done in real space, checking that centering is the same, and without uncentering anything.
2019-03-11cell_tool: Don't uncenter cells before comparisonThomas White
2019-03-11cell_tool: Check --tolerance has the right number of commasThomas White
2019-03-11Don't use within_tolerance for anglesThomas White
2019-03-11Remove cells_are_similar() from APIThomas White
There are two functions with this name. Avoid confusion.
2019-03-11cell_tool: Add --compare (doesn't seem to work yet for some reason)Thomas White
2019-03-11Fix tolerancesThomas White
2019-03-11cell_tool: Improve option processingThomas White
2019-03-11Show the actual number of ordersThomas White
2019-03-11cell_tool: Use libcrystfel cells_are_similar() functionThomas White
2019-03-11cell_tool: Add --ringsThomas White
2019-03-11cell_tool --uncenter: Write unit cell to fileThomas White
2019-03-11cell_tool: Add --uncenterThomas White
2019-03-11Initial cell_tool (implementing find_ambi only)Thomas White
2019-03-07indexamajig: Status message improvementsThomas White
1. Show the number of hits 2. Keep producing updates while the last patterns are being processed 3. Don't duplicate the code for displaying the status messages
2019-03-07Remove old debug messageThomas White
2019-03-06indexamajig: Rename --min-gradient to --min-squared-gradientThomas White
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient.
2019-03-01partialator: Fix two small memory leaksThomas White
2019-03-01partialator: Check for failed minimiser setup in write_grid()Thomas White
2019-03-01partialator: Fix string overruns in write_grid()Thomas White
2019-03-01partialator: Avoid double-free of stuff_from_stream and filenameThomas White
2019-01-30Simplify fill_queue()Thomas White
2019-01-30Fixes for get_pattern()Thomas White
2019-01-30Fix read_prefixed_filename()Thomas White
2019-01-29Remove debugging messageThomas White
2019-01-29Fix some compiler warnings about string handlingThomas White
2019-01-29Tidy up no_moreThomas White
2019-01-29Improvements to get_pattern()Thomas White
2019-01-29Add multi_event_geometry() functionThomas White
2019-01-29hdfsee: Fix possible string truncationThomas White
2019-01-28partialator: Display error message if minimiser can't be set upThomas White
2019-01-28partialator: Fix incorrect free(audit_info)Thomas White
2019-01-28partialator: Catch failure to set up post-refinement minimiserThomas White
2019-01-28partialator: Fix multiple memory leaksThomas White
2019-01-28partialator: Fix a small typoThomas White
2019-01-22Fix some small memory leaksThomas White
2019-01-03indexamajig: Return non-zero exit status if no patterns were processedThomas White
2018-12-18make_pixelmap: Use <input>.h5 as default output filenameThomas White
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