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2018-02-27indexamajig: Add --overpredictThomas White
2018-02-27Separate partiality calculation from predictionThomas White
2018-02-08FormattingThomas White
2018-02-08Fix indexamajig help formatting.Kenneth R. Beyerlein
2018-02-08Changed the naming of felix options and variables to make them more obvious.Kenneth R. Beyerlein
2018-02-08Change Felix min-uniqueness paramter name to max-uniqueness.Kenneth R. Beyerlein
2018-02-08Add Felix option felix-max-inter-angleKenneth R. Beyerlein
2018-02-08Make felix-domega optionKenneth R. Beyerlein
2018-01-19partialator: Improve message about "Not refining unity model"Thomas White
It sounded too much like a warning. Now it's a bit more friendly.
2017-12-12indexamajig: Actually rename serial-offset to serial-startThomas White
2017-12-12indexamajig: Rename --serial-offset to --serial-startThomas White
Because "offset" sounds like it will add the argument to the serial numbers, i.e. --serial-offset=500 would start at 501. Actually, you just give the first serial number you'd like.
2017-12-12indexamajig: Add --serial-offsetThomas White
2017-12-12check_hkl: Check for limiting top bin caseThomas White
2017-11-23Avoid truncation with snprintfThomas White
Just something that came from new compiler warnings after upgrading my system.
2017-11-15Use GDK_a/b instead of GDK_KEY_a/bThomas White
Some people using old libraries out there.
2017-11-14hdfsee: Use a/b keys to change ring sizeThomas White
2017-10-27Fix Felix tth options typo.Kenneth R. Beyerlein
2017-10-27Merge branch 'tom/simpler_felix'Thomas White
2017-10-23Check return values from fread/fgetsThomas White
2017-10-19partial_sim: Write the symmetry to the reflection listThomas White
2017-10-19partial_sim: Show the symmetry of the reflection listThomas White
2017-10-19partial_sim: Use symmetry from fileThomas White
2017-10-19pattern_sim: Show the symmetry of the reflection listThomas White
2017-10-19pattern_sim: Use symmetry from fileThomas White
2017-10-19get_hkl: Use symmetry from fileThomas White
2017-10-19compare_hkl: Use symmetry from fileThomas White
2017-10-19check_hkl: Use symmetry from fileThomas White
2017-10-19render_hkl: Use symmetry from fileThomas White
2017-10-18indexamajig: Auto-detection of available indexing methodsThomas White
2017-10-17Handle old indexing methodsThomas White
There are limits to how well they can be handled, but this avoids screwing users over too much.
2017-10-12indexamajig: Simplify Felix optionsThomas White
2017-10-12hdfsee: Add "peaks", "preds" or "rings" to export filename, as applicableThomas White
2017-10-12hdfsee: Add event ID to exported image filenameThomas White
2017-10-02indexamajig: Tidy up --helpThomas White
2017-10-02indexamajig: Add missing documentation for --check-peaksThomas White
2017-09-27Fix check for CBF files in event enumerationThomas White
-1 means the check failed.
2017-09-22cell_explorer: Also count cells excluded by the choice of indexing methodThomas White
2017-09-22indexamajig: Avoid segfault when no unit cell givenThomas White
2017-09-21hdfsee: Increase ring thicknessThomas White
2017-09-21indexamajig: Hide indexing setup messages if we are not indexing anythingThomas White
2017-09-21Improve error message when using CBF files and a multi-event geometryThomas White
2017-09-19geoptimiser: Remove deprecated option from --helpThomas White
2017-09-17Fix logic for new indexing optionsThomas White
2017-09-17indexamajig: --help documentation for new indexing optionsThomas White
2017-09-15Simplify indexing optionsThomas White
mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions.
2017-09-07Add compare_cells() (and use it in whirligig)Thomas White
2017-09-05cell_explorer: Display number of matching cells (on terminal)Thomas White
2017-09-04pattern_sim: Add crystal orientation and basis vectorsThomas White
2017-08-09partial_sim: Add missing bracket in parameter listThomas White
2017-07-24TakeTwo options againThomas White
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