CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	Count properly (again)	Thomas White

2012-02-22	Comment out debug	Thomas White

2012-02-22	Count properly	Thomas White

2012-02-22	Some more terms go to zero if a reference is available	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	Scaling with reference now works	Thomas White
	It was always working, but I'd set the partialities to 1 in partial_sim but not partialator.
2012-02-22	Split off solve_diagonal()	Thomas White

2012-02-22	Unify uh and vh calculations	Thomas White

2012-02-22	WIP on scaling	Thomas White

2012-02-22	Don't give NaN for shift	Thomas White

2012-02-22	Set all scale factor when using simple matrix solution	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	Add two more FIXMEs	Thomas White

2012-02-22	Add a FIXME	Thomas White

2012-02-22	Use reference reflections for scaling	Thomas White

2012-02-22	partialator: Take reference file	Thomas White

2012-02-22	PR gradient check	Thomas White

2012-02-22	indexamajig: Derive Zaefferer window size from peak separation in geometry ↵	Thomas White
	description
2012-02-22	Formatting	Thomas White

2012-02-22	hdfsee: Allow configuration of the ring radius	Thomas White

2012-02-22	Tidy up	Thomas White

2012-02-22	Save all camera lengths in stream	Thomas White

2012-02-22	Move write_detector_geometry() to calibrate_detector.c	Thomas White
	... because it's not sufficiently general.
2012-02-22	Don't attempt to write camera length if detector geometry is not present	Thomas White

2012-02-22	General fussiness	Thomas White

2012-02-22	Safeguard against silly unit cells in find_intersections()	Thomas White

2012-02-22	Disable divergence simulation (for now)	Thomas White

2012-02-22	Make sure redundancy gets set to zero when integrating peaks on ignored panels	Thomas White

2012-02-22	Formatting	Thomas White

2012-02-22	Add "-u" (unity scaling) option to compare_hkl	Thomas White

2012-02-22	Whitespace	Thomas White

2012-02-22	add 3 ring background estimate; change default integration radius to 3	Andrew Martin

2012-02-22	calculate background with 3 rings	Andrew Martin

2012-02-22	Set redundancy to zero if peak can't be integrated	Thomas White
	This should fix the reappearance of "no_index-ed" peaks in stream files.
2012-02-22	Tidy up parser and add lots of checks	Thomas White

2012-02-22	Add half a pixel to coordinates when integrating peak	Thomas White
	Choose whichever one of these reasons makes most sense to you: 1. The centroid operation gives the position as a "pixel index", but we really want it as a distance in pixels from the corner. 2. If all the intensity is in one pixel, the best estimate of where the photons hit is in the middle of the pixel, not its corner.
2012-02-22	Get rid of integrate_pixels()	Thomas White

2012-02-22	Get rid of pattern_sim --near-bragg	Thomas White

2012-02-22	Banish find_projected_peaks()	Thomas White

2012-02-22	Remove a FIXME (parser is now generalised)	Thomas White

2012-02-22	Tidy up formatting	Thomas White

2012-02-22	Tidy up whitespace	Thomas White

2012-02-22	Parser for linear combinations of x and y for fs and ss	Thomas White
	Conflicts: src/detector.c src/peaks.c
2012-02-22	Tidy up	Thomas White

2012-02-22	Add divergence to CPU version as well	Thomas White

2012-02-22	Add another error code to clError()	Thomas White

2012-02-22	Add divergence to calculation	Thomas White

2012-02-22	Remove ERROR() from clError()	Thomas White
	This rather blatently leads to a nice deadlock
2012-02-22	Fussiness	Thomas White

2012-02-22	Tidy up peak integration and update unit test	Thomas White