| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2015-04-20 | Make panel assignments invariant during prediction- and post-refinement | Thomas White | |
| Reflections appearing and disappearing are problematic when trying to do a least-squares refinement. Therefore, assume that reflections stay on panel and keep them under consideration even if their partialities go to zero (i.e. they drift off Bragg). This should stabilise both refinements, and simplifies quite a lot of code. Collateral "damage": the old "select_intersection()" is now gone. | |||
| 2015-04-20 | WIP on refinement guts | Thomas White | |
| 2015-04-20 | Add gradient test program and fix gradients | Thomas White | |
| 2015-04-20 | Add prediction refinement | Thomas White | |
| 2015-04-20 | pattern_sim: Normalise spectrum to avoid intensity decreasing with number of ↵ | Thomas White | |
| samples | |||
| 2015-04-20 | partial_sim: Initialise stuff | Thomas White | |
| 2015-04-20 | partial_sim: Complain if geometry contains HDF5 references | Thomas White | |
| 2015-04-20 | partial_sim: Update --help and manual | Thomas White | |
| 2015-04-20 | Fix a string overflow vulnerability, and banish extract_f_from_stuff() | Thomas White | |
| 2015-04-20 | cell_explorer: Ensure initialisation of active_indms[] | Thomas White | |
| 2015-04-01 | Formatting | Thomas White | |
| 2015-04-01 | geoptimiser: Unpack panel data into image->dp before attempting to save PNG | Thomas White | |
| Fixed CRYS-92 (segfault on saving error maps) | |||
| 2015-04-01 | cell_explorer: Switch font to Liberation Serif (from "Serif") | Thomas White | |
| This makes the Greek letters come up at SLAC. | |||
| 2015-04-01 | Initialise indexed_by to INDEXING_NONE | Thomas White | |
| Not entirely sure how this was missed for so long. | |||
| 2015-03-20 | hdfsee: Fix a typo | Thomas White | |
| 2015-03-19 | hdf5_read(): Create simple geometry | Thomas White | |
| This allows unpack_panels() to be called, and hence the same data structures to be available in the simple and geometry cases. Some changes were necessary to hdfsee, which previously created the simple geometery itself | |||
| 2015-03-18 | hdfsee: Use per-panel data and recognise bad regions properly | Thomas White | |
| 2015-03-13 | Move solve_svd() to utils | Thomas White | |
| 2015-03-12 | Remove weighting | Thomas White | |
| This reverts the previous commit. Obviously, if the sigma(I) value is negative, stuff goes wrong. Need a better weighting scheme here. | |||
| 2015-03-12 | Restore weighting when determining scale factors | Thomas White | |
| 2015-03-12 | Fix correction for scaling | Thomas White | |
| 2015-03-12 | Tweak rejection criteria | Thomas White | |
| 2015-03-12 | Keep the centre of the B factor distribution at zero | Thomas White | |
| 2015-03-12 | Show more information about rejected crystals | Thomas White | |
| 2015-03-12 | Show changes in B factors and rejected crystals | Thomas White | |
| 2015-03-12 | partialator: Add --start-params | Thomas White | |
| 2015-03-12 | partialator: Disable early rejection (for now) | Thomas White | |
| 2015-03-12 | Fussiness (extreme) | Thomas White | |
| 2015-03-12 | Increase number of cycles for scaling | Thomas White | |
| 2015-03-12 | Fix silly bug in B factor | Thomas White | |
| 2015-03-12 | Use running variance formula and add weighting | Thomas White | |
| 2015-03-12 | Remove debugging stuff | Thomas White | |
| 2015-03-12 | Improve rejection | Thomas White | |
| 2015-03-12 | partialator: Add B-factor scaling and rejection | Thomas White | |
| 2015-03-12 | compare_hkl: Use B-factor scaling | Thomas White | |
| 2015-03-04 | hdfsee: Support peak lists with only fs,ss coordinates | Thomas White | |
| 2015-03-02 | process_hkl: Improve errors a bit | Thomas White | |
| 2015-02-23 | hdfsee: Fix text in "Go to event" box | Thomas White | |
| 2015-02-23 | Added option to jump to random event | Valerio Mariani | |
| 2015-02-23 | geoptimiser: Fix option string | Thomas White | |
| 2015-02-23 | geoptimiser: Fix colour scale of error maps | Thomas White | |
| 2015-02-23 | geoptimiser: look at the right crystal | Thomas White | |
| 2015-02-23 | -e option for hdfsee overrides data layout description from geometry file | Valerio Mariani | |
| 2015-02-21 | Remove unused variable | Thomas White | |
| 2015-02-21 | Fix the bug in geoptimiser which prevented the optimization of quadrants as ↵ | Valerio Mariani | |
| connected panels | |||
| 2015-02-20 | Sets saving of maps as default for geoptimiser | Valerio Mariani | |
| 2015-02-20 | indexamajig: Show event ID if there are implausible reflections | Thomas White | |
| 2015-02-20 | indexamajig: Intelligently set default peak path | Thomas White | |
| 2015-02-20 | indexamajig: Take a copy of the geometry structure | Thomas White | |
| There are already things which alter this structure during processing, and probably more to come. Taking a copy avoids problems down the line and fixes a serious bug when using coffset and a fixed clen. | |||
| 2015-02-19 | get_detector_geometry(): allow beam==NULL | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
| aboutsummaryrefslogtreecommitdiff |