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2016-07-29Panel coordinate fixes for GPU simulationThomas White
2016-07-29hdfsee: Fix crash because of panel nameThomas White
2016-07-29hdfsee: Fix coordinatesThomas White
2016-07-15partial_sim: Fix rounding for sketchesThomas White
2016-07-15geoptimiser: Fix correction of average displacementsThomas White
2016-07-15geoptimiser: Output angles were in radians, not degrees (!)Thomas White
2016-07-08geoptimiser: Remove three more pointless data structuresThomas White
2016-07-08FormattingThomas White
2016-07-08geoptimiser: Combine correction of corner coordinatesThomas White
2016-07-05geoptimiser: Update avg_displ_{x,y} straight after adjusting panelThomas White
2016-07-01geoptimiser: More fixing of labelsThomas White
They're x/y offsets, not fs/ss
2016-07-01geoptimiser: Simplification/clarificationThomas White
2016-07-01geoptimiser: Fix a FIXMEThomas White
They're x/y coordinates, not fs/ss. Fixed the labelling as well.
2016-07-01geoptimiser: Fix a typoThomas White
2016-07-01geoptimiser: Improve status indicator when loading patternsThomas White
Because the status message is only printed after possibly skipping over a non-indexed pattern, if n_chunks is used it might skip entire messages. Better to use n_images, which is always incremented just before possibly printing the message.
2016-07-01Fix dw-hdfsee.cThomas White
2016-07-01Fix hdfsee-render.cThomas White
2016-07-01Remove slab-relative coordinates from geoptimiserThomas White
2016-07-01geoptimiser: Use GSL median functionThomas White
2016-07-01Remove slab-relative coordinates from partial_sim and pattern_simThomas White
2016-05-13{check,compare}_hkl: Add warnings when using potentially silly option choicesThomas White
2016-05-12geoptimiser: Only do g_type_init() if HAVE_SAVE_TO_PNGThomas White
2016-03-22Workaround for CLOCK_MONOTONIC_RAW on old Linux (<2.6.28)Thomas White
2016-03-18cell_explorer: Switch font back to Serif (from Liberation Serif)Thomas White
This makes the Greek letters come up at SLAC.... again. Reverts 779d87eb08fa2b185c43a82814aecc0e1a00eef9.
2016-03-14Add SA_RESTART to signal handlersThomas White
Fixes corrupted output when heavily multi-processing.
2016-03-01indexamajig: Wall clock profilingThomas White
2016-02-23hdfsee: Fix panel/feature names in numbers windowThomas White
2016-02-09pattern_sim: Initialise stuff for powder HDF5Thomas White
2016-02-08FormattingThomas White
2016-02-05partialator: add --output-every-cycle option to write .hkl* and .params ↵Keitaro Yamashita
files in every cycle
2016-01-30indexamajig: Restore --no-refineThomas White
Adds yet another indexing option...
2016-01-29Perform prediction refinement straight after indexingThomas White
This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working.
2016-01-08ambigator: Don't require -yThomas White
The manual says that -y 1 is the default.
2016-01-08Replace incorrect label in geoptimiserValerio Mariani
2016-01-06Rearrange columns in partialator.paramsThomas White
2016-01-06Print filename and event string in the partialator.params output fileValerio Mariani
2015-12-18Saturation map fixesThomas White
2015-12-17list_events: Handle broken event listThomas White
2015-12-13indexamajig: Restart fgets() in pump_chunk() if interrupted by system callThomas White
This fixes the occasional unterminated chunk found in the output.
2015-12-01hdfsee: Round panel transformations before passing them to CairoThomas White
This prevents the slight blurring of image data which happened before.
2015-11-27indexamajig: Write target unit cell into streamThomas White
2015-11-19Maximum number of iterations for scalingThomas White
2015-11-19partialator: Set default push-res to infinityThomas White
Not needed now that the scaling is more stable
2015-11-19Monitor average BThomas White
2015-11-19Count reflections in merge and scalingThomas White
2015-11-18Move B factor limit to general rejection functionThomas White
2015-11-18No free-flagged reflections in merge for scalingThomas White
2015-11-18Factorise get_locked_reflection()Thomas White
2015-11-18partialator: Scale (strictly) using strong reflections onlyThomas White
2015-11-18merge_intensities(): add use_weak optionThomas White
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