Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-03-11 | indexamajig: Add --wavelength-estimate | Thomas White | |
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy | |||
2021-03-05 | Mass update of copyright dates in source code comments | Thomas White | |
2021-03-04 | SLURM: Better handling of job cancellation/crashing | Thomas White | |
2021-03-04 | SLURM: Cancel job by calling scancel | Thomas White | |
The API for cancelling a job seems to be Complicated. The source code for scancel is nearly a thousand lines long! The API also seems to have just changed. So, let's just run scancel and be done with it. | |||
2021-03-04 | SLURM: Add one to serial offsets | Thomas White | |
They should start from 1, not 0. | |||
2021-03-04 | SLURM: Set serial offset for indexamajig jobs | Thomas White | |
2021-03-04 | GUI: When starting indexing, prefix relative filenames with ../ | Thomas White | |
2021-03-04 | read_number_processed: Only look at end of log file | Thomas White | |
2021-03-04 | SLURM: Clean up some exit paths | Thomas White | |
2021-03-04 | start_slurm_job: Save the real stderr filename | Thomas White | |
2021-03-04 | SLURM: Implement indexing progress monitoring for job arrays | Thomas White | |
2021-03-03 | GUI: Submit indexing jobs as job arrays, not individual jobs | Thomas White | |
2021-03-03 | SLURM: Remove unused stuff | Thomas White | |
2021-03-03 | SLURM: Add access to account and feature constraints | Thomas White | |
2021-03-03 | SLURM: Factorise common options even more | Thomas White | |
2021-03-03 | Add get_text_or_null | Thomas White | |
2021-03-03 | SLURM: Factorise widget creation for common backend options | Thomas White | |
2021-03-02 | GUI: Add menu item to clear log | Thomas White | |
2021-03-02 | CrystFELImageView: Set limits on zooming | Thomas White | |
2021-03-02 | GUI: Add tooltips to navigation buttons | Thomas White | |
2021-03-02 | GUI: Add tooltips for peak search parameters | Thomas White | |
2021-03-01 | GUI: Fix counting of processed frames during indexing | Thomas White | |
2021-03-01 | Local BE: Write a script and run it | Thomas White | |
This easily gives us the stdout.log and stderr.log needed for monitoring the job. | |||
2021-03-01 | GUI: Pass --peak-radius to indexamajig | Thomas White | |
Another one missed out before. | |||
2021-03-01 | GUI: Pass --int-radius to indexamajig | Thomas White | |
Whoops - this was missed out before. This also reduces the precision displayed in the dialog box to reflect what is actually passed to indexamajig. | |||
2021-03-01 | GUI: Add lots of tooltips | Thomas White | |
2021-03-01 | GUI: Reject job names containing path separators | Thomas White | |
2021-03-01 | GUI: Fix some command-line options for indexamajig | Thomas White | |
2021-03-01 | GUI: Add history list for random image selection | Thomas White | |
2021-02-26 | GUI: Automatically generate new job names | Thomas White | |
2021-02-26 | Remove unused variables | Thomas White | |
2021-02-26 | GUI: Delay connecting signals until entire import window is ready | Thomas White | |
2021-02-26 | CrystFELImageView: Set need_recentre at start | Thomas White | |
2021-02-25 | GUI: Factorise force_{peaks,refls}_on | Thomas White | |
This should help avoid them getting out of sync. Again. | |||
2021-02-25 | GUI: Make sure items under View menu are set correctly at the start | Thomas White | |
2021-02-25 | GUI: Improve image info bar | Thomas White | |
(...and work through horrific circular logic during creation) | |||
2021-02-25 | GUI: Complain more loudly if geometry can't be loaded | Thomas White | |
2021-02-25 | GUI: Geometry load/replace logic | Thomas White | |
2021-02-25 | GUI: Implement optional dumping of old results | Thomas White | |
2021-02-25 | GUI: Implement "load list of files" and "load single file" | Thomas White | |
Eventually, both of these should support selecting multiple files. This is currently not possible using GtkFileChooserButton. If someone wanted to write a GtkMultiFileChooserButton, it would become possible. | |||
2021-02-25 | CrystFELImageView: Fix first crystal colour | Thomas White | |
2021-02-24 | GUI: Move import stuff to separate file | Thomas White | |
2021-02-24 | GUI: Sketch out new data import window | Thomas White | |
2021-02-23 | Centre image at start (or on zoom reset) | Thomas White | |
This just sets the scroll bars to the middle position, which is not necessarily the middle of the detector. Still, it's better than starting at the edge every time. | |||
2021-02-23 | GUI: Add option for manual zoom reset | Thomas White | |
This is sometimes necessary, such as when switching between results with drastically different geometries (which obviously shouldn't happen much!). | |||
2021-02-23 | CrystFELImageView: Redraw even less | Thomas White | |
2021-02-23 | CrystFELImageView: Use different colours for multiple crystals | Thomas White | |
This adds a cycle of four colours. It seems difficult to choose colours that are always clearly visible, but maybe the list can be extended in the future. | |||
2021-02-23 | CrystFELImageView: Queue a redraw after changing settings | Thomas White | |
2021-02-23 | CrystFELImageView: Make peak/reflection markers slightly transparent | Thomas White | |
This allows the pixel values underneath to be read. | |||
2021-02-22 | Set peak and reflection radii after indexing one pattern | Thomas White | |
This ensures that the display matches the parameters that were last used. |