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2021-03-19FromFile indexer: Option processingThomas White
This give FromFile its own private command-lien option processing, like the other indexers. It removes the ability to auto-generate the solution filename, but I don't think there's a way to do that without breaking abstractions.
2021-03-12GUI: Add NULL filename for FromFile indexing (which isn't used here)Thomas White
2021-03-12Clean up after mergeThomas White
2021-03-12Merge branch 'pascal/electrons'Thomas White
2021-03-11indexamajig: Use static wavelength from DataTemplate as estimateThomas White
If the geometry file contains a literal wavelength, then let's use it. That's better than nagging the user for a --wavelength-estimate.
2021-03-11indexamajig: Add --max-indexer-threadsThomas White
This is a more general replacement for --pinkIndexer-thread-count.
2021-03-11indexamajig: Remove misleading messageThomas White
Spectrum file is currently not supported at all. Maybe later.
2021-03-11PinkIndexer: Remove custom indexing checksThomas White
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it.
2021-03-11detgeom_transform_coords: Take an additional detector shiftThomas White
This allows the refined detector position to be used in a lot of places.
2021-03-11setup_indexing: Remove dtemplThomas White
There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object.
2021-03-11indexamajig: Add --wavelength-estimateThomas White
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy
2021-03-05Mass update of copyright dates in source code commentsThomas White
2021-03-04SLURM: Better handling of job cancellation/crashingThomas White
2021-03-04SLURM: Cancel job by calling scancelThomas White
The API for cancelling a job seems to be Complicated. The source code for scancel is nearly a thousand lines long! The API also seems to have just changed. So, let's just run scancel and be done with it.
2021-03-04SLURM: Add one to serial offsetsThomas White
They should start from 1, not 0.
2021-03-04SLURM: Set serial offset for indexamajig jobsThomas White
2021-03-04GUI: When starting indexing, prefix relative filenames with ../Thomas White
2021-03-04read_number_processed: Only look at end of log fileThomas White
2021-03-04SLURM: Clean up some exit pathsThomas White
2021-03-04start_slurm_job: Save the real stderr filenameThomas White
2021-03-04SLURM: Implement indexing progress monitoring for job arraysThomas White
2021-03-03GUI: Submit indexing jobs as job arrays, not individual jobsThomas White
2021-03-03SLURM: Remove unused stuffThomas White
2021-03-03SLURM: Add access to account and feature constraintsThomas White
2021-03-03SLURM: Factorise common options even moreThomas White
2021-03-03Add get_text_or_nullThomas White
2021-03-03SLURM: Factorise widget creation for common backend optionsThomas White
2021-03-02GUI: Add menu item to clear logThomas White
2021-03-02CrystFELImageView: Set limits on zoomingThomas White
2021-03-02GUI: Add tooltips to navigation buttonsThomas White
2021-03-02GUI: Add tooltips for peak search parametersThomas White
2021-03-01GUI: Fix counting of processed frames during indexingThomas White
2021-03-01Local BE: Write a script and run itThomas White
This easily gives us the stdout.log and stderr.log needed for monitoring the job.
2021-03-01GUI: Pass --peak-radius to indexamajigThomas White
Another one missed out before.
2021-03-01GUI: Pass --int-radius to indexamajigThomas White
Whoops - this was missed out before. This also reduces the precision displayed in the dialog box to reflect what is actually passed to indexamajig.
2021-03-01GUI: Add lots of tooltipsThomas White
2021-03-01GUI: Reject job names containing path separatorsThomas White
2021-03-01GUI: Fix some command-line options for indexamajigThomas White
2021-03-01GUI: Add history list for random image selectionThomas White
2021-02-26GUI: Automatically generate new job namesThomas White
2021-02-26Remove unused variablesThomas White
2021-02-26GUI: Delay connecting signals until entire import window is readyThomas White
2021-02-26CrystFELImageView: Set need_recentre at startThomas White
2021-02-25GUI: Factorise force_{peaks,refls}_onThomas White
This should help avoid them getting out of sync. Again.
2021-02-25GUI: Make sure items under View menu are set correctly at the startThomas White
2021-02-25GUI: Improve image info barThomas White
(...and work through horrific circular logic during creation)
2021-02-25GUI: Complain more loudly if geometry can't be loadedThomas White
2021-02-25GUI: Geometry load/replace logicThomas White
2021-02-25GUI: Implement optional dumping of old resultsThomas White
2021-02-25GUI: Implement "load list of files" and "load single file"Thomas White
Eventually, both of these should support selecting multiple files. This is currently not possible using GtkFileChooserButton. If someone wanted to write a GtkMultiFileChooserButton, it would become possible.
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