CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2012-02-22	Add "-u" (unity scaling) option to compare_hkl	Thomas White

2012-02-22	Whitespace	Thomas White

2012-02-22	add 3 ring background estimate; change default integration radius to 3	Andrew Martin

2012-02-22	calculate background with 3 rings	Andrew Martin

2012-02-22	Set redundancy to zero if peak can't be integrated	Thomas White
	This should fix the reappearance of "no_index-ed" peaks in stream files.
2012-02-22	Tidy up parser and add lots of checks	Thomas White

2012-02-22	Add half a pixel to coordinates when integrating peak	Thomas White
	Choose whichever one of these reasons makes most sense to you: 1. The centroid operation gives the position as a "pixel index", but we really want it as a distance in pixels from the corner. 2. If all the intensity is in one pixel, the best estimate of where the photons hit is in the middle of the pixel, not its corner.
2012-02-22	Get rid of integrate_pixels()	Thomas White

2012-02-22	Get rid of pattern_sim --near-bragg	Thomas White

2012-02-22	Banish find_projected_peaks()	Thomas White

2012-02-22	Remove a FIXME (parser is now generalised)	Thomas White

2012-02-22	Tidy up formatting	Thomas White

2012-02-22	Tidy up whitespace	Thomas White

2012-02-22	Parser for linear combinations of x and y for fs and ss	Thomas White
	Conflicts: src/detector.c src/peaks.c
2012-02-22	Tidy up	Thomas White

2012-02-22	Add divergence to CPU version as well	Thomas White

2012-02-22	Add another error code to clError()	Thomas White

2012-02-22	Add divergence to calculation	Thomas White

2012-02-22	Remove ERROR() from clError()	Thomas White
	This rather blatently leads to a nice deadlock
2012-02-22	Fussiness	Thomas White

2012-02-22	Tidy up peak integration and update unit test	Thomas White

2012-02-22	Make background subtraction optional	Thomas White

2012-02-22	Tidy up dead code and formatting	Thomas White

2012-02-22	process_hkl: Clean up --help	Thomas White
	This option was removed a long time ago.
2012-02-22	Use vector types in match_cell_ab(), and correct left handed cells	Thomas White

2012-02-22	Set error flag to zero	Thomas White

2012-02-22	Add partial matching (against 'a' and 'b' only)	Thomas White

2012-02-22	Tidy up (mostly powder_plot)	Thomas White

2012-02-22	Add many new features to powder_plot	Andrew Aquila

2012-02-22	compare_hkl: Don't crash if scale factor can't be found	Thomas White

2012-02-22	compare_hkl: Fix appalling scaling behaviour	Thomas White

2012-02-22	pattern_sim: Use compression	Thomas White

2012-02-22	GSL BLAS fudge needed in utils.c as well	Thomas White

2012-02-22	Rename cell_new_from_axes() to avoid confusion	Thomas White

2012-02-22	get_hkl: Fix stupid bug	Thomas White

2012-02-22	cell_new_from_cell() should preserve orientation	Thomas White

2012-02-22	Use cell_free() instead of free() if DirAx's result is invalid	Thomas White

2012-02-22	Fix --cell-reduction=compare	Thomas White
	It must be allowed to add zero multiples of an axis length, otherwise the best it can do is a+b+c, or a+b-c etc.
2012-02-22	Fussiness	Thomas White

2012-02-22	Formatting	Thomas White

2012-02-22	Move gaussian_noise() to utils.c and synergise it with poisson_noise()	Thomas White

2012-02-22	Don't prefix progress bar with thread number	Thomas White

2012-02-22	Fix progress bar after refining all images	Thomas White

2012-02-22	Also mess up scale factors	Thomas White

2012-02-22	Use Gaussian noise to mess up unit cell	Thomas White

2012-02-22	Don't complain if post refinement equations can't be solved	Thomas White

2012-02-22	Fussiness	Thomas White

2012-02-22	partial_sim: Mess up all the unit cell axes	Thomas White

2012-02-22	partialator: Refine all images	Thomas White

2012-02-22	Fussiness	Thomas White