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<?xml version="1.0"?>
<!DOCTYPE book PUBLIC "-//OASIS//DTD DocBook XML V4.3//EN"
               "http://www.oasis-open.org/docbook/xml/4.3/docbookx.dtd"
[
  <!ENTITY % local.common.attrib "xmlns:xi  CDATA  #FIXED 'http://www.w3.org/2003/XInclude'">
]>
<book id="index">
  <bookinfo>
    <title>CrystFEL Reference Manual</title>
    <releaseinfo>
      For CrystFEL 0.2.0.
    </releaseinfo>
    <abstract>
    This is the internal documentation for CrystFEL.  Unless you are looking at
    the code, writing new programs or fixing bugs, you should not need to read
    this.  You might use the information here when reading the code or to better
    understand how the software works, or refer to it when creating a new
    program within the suite.
    </abstract>
  </bookinfo>

  <chapter>
    <title>Images</title>
        <xi:include href="xml/image.xml"/>
  </chapter>

  <chapter>
    <title>Handling reflection data</title>
        <abstract>There are three main reflection list thingies.</abstract>
        <xi:include href="xml/reflist.xml"/>
        <xi:include href="xml/reflist-utils.xml"/>
        <xi:include href="xml/reflitemlist.xml"/>
  </chapter>

  <chapter>
    <title>Unit cells</title>
        <xi:include href="xml/unitcell.xml"/>
  </chapter>

  <chapter>
    <title>Miscellaneous</title>
        <xi:include href="xml/quaternion.xml"/>
        <xi:include href="xml/utils.xml"/>
  </chapter>

  <index id="api-index-full">
    <title>API Index</title>
    <xi:include href="xml/api-index-full.xml"><xi:fallback /></xi:include>
  </index>
</book>