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<SECTION>
<FILE>reflist</FILE>
RefList
Reflection
RefListIterator
<SUBSECTION>
reflist_new
reflist_free
<SUBSECTION>
add_refl
<SUBSECTION>
first_refl
next_refl
<SUBSECTION>
find_refl
next_found_refl
<SUBSECTION>
get_excitation_error
get_detector_pos
get_partiality
get_indices
get_symmetric_indices
get_intensity
get_partial
get_scalable
get_redundancy
get_sum_squared_dev
get_esd_intensity
get_phase
<SUBSECTION>
set_detector_pos
set_partial
set_int
set_scalable
set_redundancy
set_sum_squared_dev
set_esd_intensity
set_ph
set_symmetric_indices
<SUBSECTION>
copy_data
num_reflections
tree_depth
</SECTION>
<SECTION>
<FILE>reflist-utils</FILE>
write_reflist
write_reflections_to_file
read_reflections
read_reflections_from_file
asymmetric_indices
</SECTION>
<SECTION>
<FILE>reflitemlist</FILE>
ReflItemList
<SUBSECTION>
new_items
add_item
add_item_with_op
clear_items
delete_items
find_item
num_items
union_items
union_op_items
intersection_items
get_item
</SECTION>
<SECTION>
<FILE>unitcell</FILE>
UnitCell
<SUBSECTION>
cell_new
cell_new_from_cell
cell_new_from_direct_axes
cell_new_from_parameters
cell_new_from_reciprocal_axes
cell_free
<SUBSECTION>
cell_get_cartesian
cell_get_parameters
cell_get_pointgroup
cell_get_reciprocal
cell_get_spacegroup
<SUBSECTION>
cell_set_cartesian
cell_set_cartesian_a
cell_set_cartesian_b
cell_set_cartesian_c
cell_set_parameters
cell_set_pointgroup
cell_set_reciprocal
cell_set_spacegroup
<SUBSECTION>
cell_rotate
rotate_cell
cell_print
resolution
match_cell
match_cell_ab
</SECTION>
<SECTION>
<FILE>utils</FILE>
show_matrix_eqn
AssplodeFlag
C_VACUO
ELECTRON_CHARGE
ERROR
J_to_eV
PLANCK
STATUS
THOMSON_LENGTH
assplode
biggest
check_prefix
chomp
deg2rad
eV_to_J
gaussian_noise
safe_basename
progress_bar
rad2deg
is_odd
modulus
poisson_noise
notrail
smallest
ph_en_to_lambda
ph_lambda_to_en
</SECTION>
<SECTION>
<FILE>quaternion</FILE>
quaternion
<SUBSECTION>
quaternion_modulus
normalise_quaternion
random_quaternion
quaternion_valid
quat_rot
</SECTION>
<SECTION>
<FILE>image</FILE>
image
ImageFeatureList
image_add_feature
image_feature_closest
image_feature_count
image_feature_list_free
image_feature_list_new
image_get_feature
image_remove_feature
</SECTION>
<SECTION>
<FILE>thread-pool</FILE>
TPGetTaskFunc
TPWorkFunc
TPFinalFunc
<SUBSECTION>
run_threads
</SECTION>
<SECTION>
<FILE>statistics</FILE>
stat_pearson_f_ignore
stat_pearson_f_zero
stat_pearson_i
stat_r1_i
stat_r1_ignore
stat_r1_zero
stat_r2
stat_rdiff_ignore
stat_rdiff_intensity
stat_rdiff_zero
stat_scale_intensity
</SECTION>
<SECTION>
<FILE>simulation</FILE>
clError
cleanup_gpu
GradientMethod
get_cl_dev
get_diffraction
get_diffraction_gpu
setup_gpu
</SECTION>
<SECTION>
<FILE>indexing</FILE>
IndexingMethod
IndexingPrivate
MAX_CELL_CANDIDATES
build_indexer_list
cleanup_indexing
prepare_indexing
index_pattern
</SECTION>
<SECTION>
<FILE>symmetry</FILE>
check_list_symmetry
check_symmetry
has_bisecting_mirror_or_diad
has_perpendicular_mirror
is_polyhedral
rotational_order
</SECTION>
<SECTION>
<FILE>detector</FILE>
copy_geom
fill_in_values
free_detector_geometry
get_detector_geometry
find_panel
find_panel_by_name
find_panel_number
</SECTION>
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