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/*
* reflist.h
*
* Fast reflection/peak list
*
* (c) 2011 Thomas White <taw@physics.org>
*
* Part of CrystFEL - crystallography with a FEL
*
*/
#ifndef REFLIST_H
#define REFLIST_H
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
/**
* RefList:
*
* A %RefList represents a list of Bragg reflections.
*
* This data structure is opaque. You must use the available accessor functions
* to read and write its contents.
*
**/
typedef struct _reflist RefList;
/**
* Reflection:
*
* A %Reflection represents a single Bragg reflection.
*
* This data structure is opaque. You must use the available accessor functions
* to read and write its contents.
*
**/
typedef struct _reflection Reflection;
/**
* RefListIterator:
*
* A %RefListIterator is an opaque data type used when iterating over a
* %RefList.
*
**/
typedef struct _reflistiterator RefListIterator;
/* Creation/deletion */
extern RefList *reflist_new(void);
extern void reflist_free(RefList *list);
extern Reflection *reflection_new(signed int h, signed int k, signed int l);
extern void reflection_free(Reflection *refl);
/* Search */
extern Reflection *find_refl(const RefList *list, signed int h, signed int k, signed int l);
extern Reflection *next_found_refl(Reflection *refl);
/* Get */
extern double get_excitation_error(const Reflection *refl);
extern void get_detector_pos(const Reflection *refl, double *fs, double *ss);
extern double get_partiality(const Reflection *refl);
extern void get_indices(const Reflection *refl,
signed int *h, signed int *k, signed int *l);
extern void get_symmetric_indices(const Reflection *refl,
signed int *hs, signed int *ks,
signed int *ls);
extern double get_intensity(const Reflection *refl);
extern void get_partial(const Reflection *refl, double *r1, double *r2,
double *p, int *clamp_low, int *clamp_high);
extern int get_scalable(const Reflection *refl);
extern int get_refinable(const Reflection *refl);
extern int get_redundancy(const Reflection *refl);
extern double get_temp1(const Reflection *refl);
extern double get_temp2(const Reflection *refl);
extern double get_esd_intensity(const Reflection *refl);
extern double get_phase(const Reflection *refl, int *have_phase);
/* Set */
extern void copy_data(Reflection *to, const Reflection *from);
extern void set_detector_pos(Reflection *refl, double exerr,
double fs, double ss);
extern void set_partial(Reflection *refl, double r1, double r2, double p,
double clamp_low, double clamp_high);
extern void set_int(Reflection *refl, double intensity);
extern void set_scalable(Reflection *refl, int scalable);
extern void set_refinable(Reflection *refl, int refinable);
extern void set_redundancy(Reflection *refl, int red);
extern void set_temp1(Reflection *refl, double temp);
extern void set_temp2(Reflection *refl, double temp);
extern void set_esd_intensity(Reflection *refl, double esd);
extern void set_ph(Reflection *refl, double phase);
extern void set_symmetric_indices(Reflection *refl,
signed int hs, signed int ks, signed int ls);
/* Insertion */
extern Reflection *add_refl(RefList *list,
signed int h, signed int k, signed int l);
extern Reflection *add_refl_to_list(Reflection *refl, RefList *list);
/* Iteration */
extern Reflection *first_refl(RefList *list, RefListIterator **piter);
extern Reflection *next_refl(Reflection *refl, RefListIterator *iter);
/* Misc */
extern int num_reflections(RefList *list);
extern int tree_depth(RefList *list);
extern void lock_reflection(Reflection *refl);
extern void unlock_reflection(Reflection *refl);
#endif /* REFLIST_H */
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