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CrystFEL - Data processing for serial crystallography
-----------------------------------------------------
Release notes for version 0.9.1
Copyright © 2012-2020 Deutsches Elektronen-Synchrotron DESY,
a research centre of the Helmholtz Association.
Authors:
Thomas White <taw@physics.org>
Richard Kirian <rkirian@asu.edu>
Kenneth Beyerlein <kenneth.beyerlein@desy.de>
Andrew Aquila <andrew.aquila@cfel.de>
Andrew Martin <andrew.martin@desy.de>
Lorenzo Galli <lorenzo.galli@desy.de>
Chun Hong Yoon <chun.hong.yoon@desy.de>
Karol Nass <karol.nass@desy.de>
Nadia Zatsepin <nadia.zatsepin@asu.edu>
Anton Barty <anton.barty@desy.de>
Cornelius Gati <cornelius.gati@desy.de>
Fedor Chervinskii <fedor.chervinskii@gmail.com>
Alexandra Tolstikova <alexandra.tolstikova@desy.de>
Wolfgang Brehm <wolfgang.brehm@gmail.com>
Valerio Mariani <valerio.mariani@desy.de>
Parker de Waal <Parker.deWaal@vai.org>
Takanori Nakane <nakane.t@gmail.com>
Keitaro Yamashita <k.yamashita@spring8.or.jp>
Oleksandr Yefanov <oleksandr.yefanov@cfel.de>
Steve Aplin <steve.aplin@desy.de>
Helen Ginn <helen@strubi.ox.ac.uk>
Thomas Grant <tgrant@hwi.buffalo.edu>
Mamoru Suzuki <mamoru.suzuki@protein.osaka-u.ac.jp>
Nicolas Riebesel <nicolas.riebesel@tuhh.de>
Yaroslav Gevorkov <yaroslav.gevorkov@desy.de>
Omri Mor <omor1@asu.edu>
CrystFEL is free software: you can redistribute it and/or modify it under the
terms of the GNU General Public License as published by the Free Software
Foundation, either version 3 of the License, or (at your option) any later
version.
CrystFEL is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with
CrystFEL. If not, see <http://www.gnu.org/licenses/>.
Overview
--------
This is a maintenance and bug-fixing release which fixes a few issues which
crept into CrystFEL 0.9.0. Here are the detils, in roughly decreasing
order of importance:
1. The unit cell comparision function, which was completely re-written for
CrystFEL 0.9.0, was updated to fix a mis-indexing problem with certain
types of unit cell. This may increase indexing rate or fix wrong output
cells in those cases.
2. The default unit cell angle tolerance, which was accidentally set to
1.5 radians in CrystFEL 0.9.0, was re-set to 1.5 degrees.
3. Build compatability was added with very new HDF5 versions (>= 1.12) and
older versions of zlib (< 1.2.3.5).
4. A problem was fixed in indexamajig when reading metadata from certain
HDF5 structures (arrays of fixed length strings).
5. The sigma(I) estimates for very weakly negative (unmerged) reflections
were improved.
6. PinkIndexer logic fixes and documentation improvements, and addition of
"--pinkIndexer-max-refinement-disbalance" option to indexamajig.
7. General documentation improvements.
For your convenience, the announcement and release notes for the previous
version (CrystFEL 0.9.0) have been included with version 0.9.1. If you're
upgrading from CrystFEL 0.8.0, you should check those files as well.
As always, you can find more details in the "ChangeLog" or the changes page
on the CrystFEL website.
API changes
-----------
"maxRefinementDisbalance" was added to "struct pinkIndexer_options".
No other API changes.
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