aboutsummaryrefslogtreecommitdiff
path: root/src/post-refinement.h
blob: 1338262377c3b016d3df52b6cff6f6bbebb221e1 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
/*
 * post-refinement.h
 *
 * Post refinement
 *
 * Copyright © 2012-2018 Deutsches Elektronen-Synchrotron DESY,
 *                       a research centre of the Helmholtz Association.
 *
 * Authors:
 *   2010-2018 Thomas White <taw@physics.org>
 *
 * This file is part of CrystFEL.
 *
 * CrystFEL is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * CrystFEL is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with CrystFEL.  If not, see <http://www.gnu.org/licenses/>.
 *
 */

#ifndef POST_REFINEMENT_H
#define POST_REFINEMENT_H


#ifdef HAVE_CONFIG_H
#include <config.h>
#endif


#include <stdio.h>

#include "image.h"
#include "utils.h"
#include "crystal.h"
#include "geometry.h"


enum prflag
{
	PRFLAG_OK = 0,
	PRFLAG_FEWREFL = 16,
	PRFLAG_SOLVEFAIL = 17,
	PRFLAG_EARLY = 18,
	PRFLAG_CC = 19,
	PRFLAG_BIGB = 20,
	PRFLAG_SCALEBAD = 21,
};


extern const char *str_prflag(enum prflag flag);

extern void refine_all(Crystal **crystals, int n_crystals,
                       RefList *full, int nthreads, PartialityModel pmodel,
                       int verbose, int cycle);

extern void write_gridscan(Crystal *cr, const RefList *full,
                           int cycle, int serial);

extern void write_specgraph(Crystal *crystal, const RefList *full,
                            signed int cycle, int serial);

/* Exported so it can be poked by tests/pr_p_gradient_check */
extern double gradient(Crystal *cr, int k, Reflection *refl,
                       PartialityModel pmodel);

extern double residual(Crystal *cr, const RefList *full, int free,
                       int *pn_used, const char *filename, int complain);

#endif	/* POST_REFINEMENT_H */