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/*
* process_image.h
*
* The processing pipeline for one image
*
* Copyright © 2012-2018 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2010-2016 Thomas White <taw@physics.org>
* 2014-2017 Valerio Mariani <valerio.mariani@desy.de>
* 2017-2018 Yaroslav Gevorkov <yaroslav.gevorkov@desy.de>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef PROCESS_IMAGE_H
#define PROCESS_IMAGE_H
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
struct index_args;
#include "integration.h"
#include "im-sandbox.h"
#include "time-accounts.h"
#include "taketwo.h"
#include "xgandalf.h"
#include "felix.h"
enum {
PEAK_PEAKFINDER9,
PEAK_PEAKFINDER8,
PEAK_ZAEF,
PEAK_HDF5,
PEAK_CXI,
};
/* Information about the indexing process which is common to all patterns */
struct index_args
{
UnitCell *cell;
int cmfilter;
int noisefilter;
int median_filter;
int satcorr;
float threshold;
float min_gradient;
float min_snr;
int check_hdf5_snr;
struct detector *det;
IndexingPrivate *ipriv;
int peaks; /* Peak detection method */
float tols[4];
struct beam_params *beam;
char *hdf5_peak_path;
int half_pixel_shift;
float pk_inn;
float pk_mid;
float pk_out;
float ir_inn;
float ir_mid;
float ir_out;
int min_res;
int max_res;
int max_n_peaks;
int min_pix_count;
int max_pix_count;
int local_bg_radius;
int min_peaks;
float min_snr_biggest_pix;
float min_snr_peak_pix;
float min_sig;
float min_peak_over_neighbour;
struct imagefile_field_list *copyme;
int integrate_saturated;
int use_saturated;
int no_revalidate;
int stream_peaks;
int stream_refls;
int stream_nonhits;
IntegrationMethod int_meth;
IntDiag int_diag;
signed int int_diag_h;
signed int int_diag_k;
signed int int_diag_l;
float push_res;
float highres;
float fix_profile_r;
float fix_bandwidth;
float fix_divergence;
int overpredict;
int profile; /* Whether or not to do wall clock profiling */
struct taketwo_options taketwo_opts;
struct xgandalf_options xgandalf_opts;
struct felix_options felix_opts;
struct spectrum *spectrum;
};
/* Information about the indexing process for one pattern */
struct pattern_args
{
/* "Input" */
struct filename_plus_event *filename_p_e;
};
extern void process_image(const struct index_args *iargs,
struct pattern_args *pargs, Stream *st,
int cookie, const char *tmpdir, int serial,
struct sb_shm *sb_shared, TimeAccounts *taccs,
char *last_task);
#endif /* PROCESS_IMAGE_H */
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