1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
|
/*
* control.h
*
* Common control structure
*
* (c) 2007 Thomas White <taw27@cam.ac.uk>
*
* dtr - Diffraction Tomography Reconstruction
*
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#ifndef CONTROL_H
#define CONTROL_H
#include <gtk/gtk.h>
#include <inttypes.h>
#define MAX_IMAGES 256
typedef enum ift_enum {
INPUT_NONE,
INPUT_QDRP,
INPUT_MRC,
INPUT_CACHE
} InputFileType;
typedef enum {
FORMULATION_CLEN,
FORMULATION_PIXELSIZE
} FormulationMode;
typedef enum {
PEAKSEARCH_NONE,
PEAKSEARCH_THRESHOLD,
PEAKSEARCH_ADAPTIVE_THRESHOLD,
PEAKSEARCH_LSQ,
PEAKSEARCH_ZAEFFERER,
PEAKSEARCH_STAT
} PeakSearchMode;
typedef enum {
RECONSTRUCTION_MAPPING,
RECONSTRUCTION_PREDICTION
} ReconstructionMode;
typedef struct imagerecord_struct {
uint16_t *image;
double tilt; /* Degrees */
double omega; /* Degrees */
FormulationMode fmode;
double pixel_size;
double camera_len;
double lambda;
double resolution;
int width;
int height;
int x_centre;
int y_centre;
} ImageRecord;
typedef struct {
int x;
int y;
double intensity;
} ImageReflection;
typedef struct cctx_struct {
/* Modes */
InputFileType inputfiletype;
FormulationMode fmode;
ReconstructionMode rmode;
PeakSearchMode psmode;
unsigned int prealign;
unsigned int savecache;
unsigned int have_centres;
/* Input filename */
char *filename;
/* Basic parameters, stored here solely so they can be copied
* into the ImageRecord(s) more easily */
double camera_length;
double omega; /* Degrees */
double resolution;
double lambda;
double pixel_size;
double x_centre;
double y_centre;
/* QDRP Parser flags */
unsigned int started;
unsigned int camera_length_set;
unsigned int omega_set;
unsigned int resolution_set;
unsigned int lambda_set;
/* The input images */
int n_images;
ImageRecord images[MAX_IMAGES];
/* Output */
struct rctx_struct *reflectionctx;
/* GTK bits */
GtkWidget *combo_algorithm;
GtkWidget *combo_peaksearch;
GtkWidget *checkbox_prealign;
GtkWidget *checkbox_savecache;
} ControlContext;
extern int control_add_image(ControlContext *ctx, uint16_t *image, int width, int height, double tilt);
extern ControlContext *control_ctx_new(void);
#endif /* CONTROL_H */
|
