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authorThomas White <taw@physics.org>2014-05-20 11:37:52 +0200
committerThomas White <taw@physics.org>2014-05-20 11:37:52 +0200
commited307095fdf7f513232fb6edcd33a311510abe4e (patch)
treeabcd3a9598045b7db98b43daa0e1a78ba88af8f6 /doc/man
parent5e885985c5703169db06872db98bfa4846ec433b (diff)
process_hkl: Add --push-res
Diffstat (limited to 'doc/man')
-rw-r--r--doc/man/indexamajig.14
-rw-r--r--doc/man/process_hkl.17
2 files changed, 8 insertions, 3 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1
index 124ee459..1f253aea 100644
--- a/doc/man/indexamajig.1
+++ b/doc/man/indexamajig.1
@@ -1,7 +1,7 @@
.\"
.\" indexamajig man page
.\"
-.\" Copyright © 2012-2013 Deutsches Elektronen-Synchrotron DESY,
+.\" Copyright © 2012-2014 Deutsches Elektronen-Synchrotron DESY,
.\" a research centre of the Helmholtz Association.
.\"
.\" Part of CrystFEL - crystallography with a FEL
@@ -320,7 +320,7 @@ Show detailed information about reflection integration when \fIcondition\fR is m
.PD 0
.IP \fB--push-res=\fIn\fR
.PD
-When \fBrescut\fR is in the integration method, integrate \fIn\fR nm^-1 higher than the apparent resolution limit of each individual crystal. If \fBrescut\fR is not used, this option has no effect. \fIn\fR can be negative to integrate \fIlower\fR than the apparent resolution limit. The default is \fB--rescut=0\fR.
+When \fBrescut\fR is in the integration method, integrate \fIn\fR nm^-1 higher than the apparent resolution limit of each individual crystal. If \fBrescut\fR is not used, this option has no effect. \fIn\fR can be negative to integrate \fIlower\fR than the apparent resolution limit. The default is \fB--rescut=0\fR. Note that you can also apply this cutoff at the merging stage using \fBprocess_hkl --push-res\fR.
.SH BUGS
ReAx indexing is experimental. It works very nicely for some people, and crashes for others. In a future version, it will be improved and fully supported.
diff --git a/doc/man/process_hkl.1 b/doc/man/process_hkl.1
index 6aeaa2a8..31beb8c6 100644
--- a/doc/man/process_hkl.1
+++ b/doc/man/process_hkl.1
@@ -1,7 +1,8 @@
.\"
.\" process_hkl man page
.\"
-.\" Copyright © 2012-2014\f Thomas White <taw@physics.org>
+.\" Copyright © 2012-2014 Deutsches Elektronen-Synchrotron DESY,
+.\" a research centre of the Helmholtz Association.
.\"
.\" Part of CrystFEL - crystallography with a FEL
.\"
@@ -119,6 +120,10 @@ Include reflections only if their peak values were less than \fIn\fR. That mean
.PD
Merge crystals only if they diffract to beyond \fIn\fR Angstroms resolution. The default is zero, i.e. no cutoff. The resolution is taken from the diffraction_resolution_limit line in the stream.
+.PD 0
+.IP \fB--push-res=\fIn\fR
+.PD
+Integrate \fIn\fR nm^-1 higher than the apparent resolution limit of each individual crystal. \fIn\fR can be negative to integrate \fIlower\fR than the apparent resolution limit. The default is \fB--rescut=inf\fR, which means no resolution cutoff at all.
.SH CHOICE OF POINT GROUP FOR MERGING