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authorThomas White <taw@physics.org>2012-10-20 05:58:30 -0700
committerThomas White <taw@bitwiz.org.uk>2012-10-20 06:38:29 -0700
commitb8b1b1ddb214823e3d9a0a30e3613399e52b87b0 (patch)
tree764b7afb33b0dfd4a796cca2b9f693d4bc9de846 /doc/reference/CrystFEL-sections.txt
parentd33230479371986bd58fc3ddc129ef91db4868d7 (diff)
Update documentation
Diffstat (limited to 'doc/reference/CrystFEL-sections.txt')
-rw-r--r--doc/reference/CrystFEL-sections.txt50
1 files changed, 48 insertions, 2 deletions
diff --git a/doc/reference/CrystFEL-sections.txt b/doc/reference/CrystFEL-sections.txt
index 3ccc1511..8da5798c 100644
--- a/doc/reference/CrystFEL-sections.txt
+++ b/doc/reference/CrystFEL-sections.txt
@@ -60,11 +60,16 @@ read_reflections
read_reflections_from_file
asymmetric_indices
res_cutoff
+check_list_symmetry
+copy_reflist
+find_equiv_in_list
</SECTION>
<SECTION>
<FILE>unitcell</FILE>
UnitCell
+LatticeType
+UnitCellTransformation
<SUBSECTION>
cell_new
cell_new_from_cell
@@ -77,7 +82,9 @@ cell_get_cartesian
cell_get_parameters
cell_get_pointgroup
cell_get_reciprocal
-cell_get_spacegroup
+cell_get_centering
+cell_get_lattice_type
+cell_get_unique_axis
<SUBSECTION>
cell_set_cartesian
cell_set_cartesian_a
@@ -86,14 +93,22 @@ cell_set_cartesian_c
cell_set_parameters
cell_set_pointgroup
cell_set_reciprocal
-cell_set_spacegroup
+cell_set_centering
+cell_set_lattice_type
+cell_set_unique_axis
<SUBSECTION>
+cell_transform
+cell_transform_inverse
tfn_combine
tfn_identity
+tfn_from_intmat
tfn_inverse
tfn_print
tfn_vector
tfn_free
+<SUBSECTION>
+
+cell_rep
</SECTION>
<SECTION>
@@ -110,6 +125,9 @@ uncenter_cell
bravais_lattice
right_handed
str_lattice
+uncenter_cell
+forbidden_reflection
+load_cell_from_pdb
</SECTION>
<SECTION>
@@ -213,6 +231,7 @@ index_pattern
run_dirax
run_mosflm
indexingprivate
+map_all_peaks
</SECTION>
<SECTION>
@@ -238,11 +257,35 @@ is_centrosymmetric
</SECTION>
<SECTION>
+<FILE>integer_matrix</FILE>
+IntegerMatrix
+<SUBSECTION>
+intmat_new
+intmat_copy
+intmat_free
+<SUBSECTION>
+intmat_get
+intmat_set
+<SUBSECTION>
+intmat_intmat_mult
+intmat_intvec_mult
+intmat_det
+intmat_inverse
+<SUBSECTION>
+intmat_equals
+intmat_is_identity
+intmat_is_inversion
+<SUBSECTION>
+intmat_print
+</SECTION>
+
+<SECTION>
<FILE>detector</FILE>
copy_geom
fill_in_values
free_detector_geometry
get_detector_geometry
+write_detector_geometry
find_panel
find_panel_by_name
find_panel_number
@@ -252,6 +295,9 @@ get_pixel_extents
get_q
get_q_for_panel
get_tt
+smallest_q
+reverse_2d_mapping
+largest_q
</SECTION>
<SECTION>