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| author | Yaroslav Gevorkov <yaroslav.gevorkov@desy.de> | 2020-02-08 01:16:02 +0100 |
|---|---|---|
| committer | Yaroslav Gevorkov <yaroslav.gevorkov@desy.de> | 2020-02-08 01:16:02 +0100 |
| commit | 1778d4c86f7afc90ed78ebd58de9a83b6233e33d (patch) | |
| tree | 857b2018bbf21d934256236bc44c196eda8eff15 /doc | |
| parent | 8823d9877ad3f1badacd232d900f269368a582b5 (diff) | |
pinIndexer documentation tuning
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/man/indexamajig.1 | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index 64929727..7bc71471 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -473,7 +473,7 @@ These set low-level parameters for the PinkIndexer indexing algorithm. .IP \fB--pinkIndexer-no-check-indexed\fR Leave the check whether a pattern is indexed completely to CrystFEL. Useful for monochromatic (since CrystFEL's prediction model is smarter than the one of pinkIndexer) or in combnation with --no-check-peaks for geometry optimization. This flag is meant to eventually disappear, when the full pink pipeline is implemented. .IP -\fB--pinkIndexer-override-bandwidth=\fIn\fR Overrides the bandwidth in (delta energy)/(mean energy) to use for indexing (which usually is defined in the geometry file). Should be used together with \fB--pinkIndexer-override-photon-energy=\fIn\fR. Note: this option sets the borders for the spectrum, whereas the option in the geometry file sets the standard deviation for a Gaussian that fits the spectrum. Internally, the standard deviation is multiplied by 5 to compute the hard borders of the spectrum. I.e., photon_energy_bandwith = 0.005 in the geometry file equals --pinkIndexer-override-bandwidth=0.025. For monochromatic experiments usually --pinkIndexer-override-bandwidth=0.01 is sufficiently large. If in doubt, use --pinkIndexer-override-visible-energy-range. +\fB--pinkIndexer-override-bandwidth=\fIn\fR Overrides the bandwidth in (delta energy)/(mean energy) to use for indexing (which usually is defined in the geometry file). Should be used together with \fB--pinkIndexer-override-photon-energy=\fIn\fR. Note: this option sets the borders for the spectrum, whereas the option in the geometry file sets the standard deviation for a Gaussian that fits the spectrum. Internally, the standard deviation is multiplied by 5 to compute the hard borders of the spectrum. I.e., photon_energy_bandwith = 0.005 in the geometry file equals --pinkIndexer-override-bandwidth=0.025. For monochromatic experiments usually --pinkIndexer-override-bandwidth=0.02 is sufficiently large. If in doubt, use --pinkIndexer-override-visible-energy-range. .IP \fB--pinkIndexer-override-photon-energy=\fIn\fR Overrides the mean energy in eV to use for indexing (which usually is defined in the geometry file). Should be used together with \fB--pinkIndexer-override-bandwidth=\fIn\fR .IP |