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authorThomas White <taw@physics.org>2021-03-11 14:20:59 +0100
committerThomas White <taw@physics.org>2021-03-11 16:10:54 +0100
commitc876486bbcb5dec16835259ff682ddb246ca5abf (patch)
tree73ed6922d7a5fc74f82bc94ba40994d5e80ce796 /doc
parent9f180701f20cf900e9b31d7e678b6acd1673ea81 (diff)
PinkIndexer: Remove wide bandwidth stuff
This will return later in a more centralised form, if we decide to work further on wide bandwidth.
Diffstat (limited to 'doc')
-rw-r--r--doc/man/indexamajig.16
1 files changed, 0 insertions, 6 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1
index 66bb51ad..d20fb682 100644
--- a/doc/man/indexamajig.1
+++ b/doc/man/indexamajig.1
@@ -448,8 +448,6 @@ These set low-level parameters for the XGANDALF indexing algorithm.
.IP \fB--pinkIndexer-max-resolution-for-indexing=\fIn\fR
.IP \fB--pinkIndexer-thread-count=\fIn\fR
.IP \fB--pinkIndexer-max-refinement-disbalance=\fIn\fR
-.IP \fB--pinkIndexer-override-bandwidth=\fIn\fR
-.IP \fB--pinkIndexer-override-visible-energy-range=\fImin-max\fR
.PD
These set low-level parameters for the PinkIndexer indexing algorithm.
@@ -469,10 +467,6 @@ These set low-level parameters for the PinkIndexer indexing algorithm.
\fB--pinkIndexer-thread-count\fR sets the thread count for internal parallelization. Default is 1. Very useful for small datasets (e.g. for screening). Internal parallelization does not significantly increase the amount of RAM needed, whereas CrystFEL's parallelization does. For HPCs typically a mixture of both parallelizations leads to best results.
.IP
\fB--pinkIndexer-max-refinement-disbalance Indexing solutions are dismissed if the refinement refined very well to one side of the detector and very badly to the other side. Allowed values range from 0 (no disbalance) to 2 (extreme disbalance), default 0.4. Disbalance after refinement usually appears for bad geometries or bad prior unit cell parameters.
-.IP
-\fB--pinkIndexer-override-bandwidth=\fIn\fR Overrides the bandwidth in (delta energy)/(mean energy) to use for indexing (which usually is defined in the geometry file). Should be used together with \fB--pinkIndexer-override-photon-energy=\fIn\fR. Note: this option sets the borders for the spectrum, whereas the option in the geometry file sets the standard deviation for a Gaussian that fits the spectrum. Internally, the standard deviation is multiplied by 5 to compute the hard borders of the spectrum. I.e., photon_energy_bandwith = 0.005 in the geometry file equals --pinkIndexer-override-bandwidth=0.025. For monochromatic experiments usually --pinkIndexer-override-bandwidth=0.02 is sufficiently large. If in doubt, use --pinkIndexer-override-visible-energy-range.
-.IP
-\fB--pinkIndexer-override-visible-energy-range=\fImin-max\fR Overrides photon energy and bandwidth according to a range of energies that have high enough intensity to produce visible Bragg spots on the detector. min and max range borders are separated by a minus sign (no whitespace).
.SH INTEGRATION OPTIONS
.PD 0