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authorThomas White <taw@bitwiz.org.uk>2012-04-10 12:04:19 +0100
committerThomas White <taw@bitwiz.org.uk>2012-04-10 12:04:19 +0100
commitcac83d4925f3543b4dfc4ce881824fea225cef7e (patch)
tree7c0d2f224ede56b00933129821ee82d7b5c9b7ac /libcrystfel/src/geometry.c
parent0b63042eb2ba93cb7706d1501f4237fe30b0ef2c (diff)
Fix maximum index calculation
Diffstat (limited to 'libcrystfel/src/geometry.c')
-rw-r--r--libcrystfel/src/geometry.c45
1 files changed, 27 insertions, 18 deletions
diff --git a/libcrystfel/src/geometry.c b/libcrystfel/src/geometry.c
index 92a0ab9a..6b01c51c 100644
--- a/libcrystfel/src/geometry.c
+++ b/libcrystfel/src/geometry.c
@@ -118,12 +118,10 @@ static double partiality(double rlow, double rhigh, double r)
static Reflection *check_reflection(struct image *image,
signed int h, signed int k, signed int l,
- double asx, double asy, double asz,
- double bsx, double bsy, double bsz,
- double csx, double csy, double csz)
+ double xl, double yl, double zl)
{
const int output = 0;
- double xl, yl, zl, tl;
+ double tl;
double rlow, rhigh; /* "Excitation error" */
signed int p; /* Panel number */
double xda, yda; /* Position on detector */
@@ -139,10 +137,6 @@ static Reflection *check_reflection(struct image *image,
klow = 1.0/(image->lambda - image->lambda*image->bw/2.0);
khigh = 1.0/(image->lambda + image->lambda*image->bw/2.0);
- /* Get the coordinates of the reciprocal lattice point */
- xl = h*asx + k*bsx + l*csx;
- yl = h*asy + k*bsy + l*csy;
- zl = h*asz + k*bsz + l*csz;
/* If the point is looking "backscattery", reject it straight away */
if ( zl < -khigh/2.0 ) return NULL;
@@ -229,6 +223,9 @@ static Reflection *check_reflection(struct image *image,
RefList *find_intersections(struct image *image, UnitCell *cell)
{
+ double ax, ay, az;
+ double bx, by, bz;
+ double cx, cy, cz;
double asx, asy, asz;
double bsx, bsy, bsz;
double csx, csy, csz;
@@ -247,15 +244,13 @@ RefList *find_intersections(struct image *image, UnitCell *cell)
return NULL;
}
- cell_get_reciprocal(cell, &asx, &asy, &asz,
- &bsx, &bsy, &bsz,
- &csx, &csy, &csz);
+ cell_get_cartesian(cell, &ax, &ay, &az, &bx, &by, &bz, &cx, &cy, &cz);
mres = largest_q(image);
- hmax = mres / modulus(asx, asy, asz);
- kmax = mres / modulus(bsx, bsy, bsz);
- lmax = mres / modulus(csx, csy, csz);
+ hmax = mres * modulus(ax, ay, az);
+ kmax = mres * modulus(bx, by, bz);
+ lmax = mres * modulus(cx, cy, cz);
if ( (hmax >= 256) || (kmax >= 256) || (lmax >= 256) ) {
ERROR("Unit cell is stupidly large.\n");
@@ -265,14 +260,23 @@ RefList *find_intersections(struct image *image, UnitCell *cell)
if ( lmax >= 256 ) lmax = 255;
}
+ cell_get_reciprocal(cell, &asx, &asy, &asz,
+ &bsx, &bsy, &bsz,
+ &csx, &csy, &csz);
+
for ( h=-hmax; h<=hmax; h++ ) {
for ( k=-kmax; k<=kmax; k++ ) {
for ( l=-lmax; l<=lmax; l++ ) {
Reflection *refl;
+ double xl, yl, zl;
- refl = check_reflection(image, h, k, l,
- asx,asy,asz,bsx,bsy,bsz,csx,csy,csz);
+ /* Get the coordinates of the reciprocal lattice point */
+ xl = h*asx + k*bsx + l*csx;
+ yl = h*asy + k*bsy + l*csy;
+ zl = h*asz + k*bsz + l*csz;
+
+ refl = check_reflection(image, h, k, l, xl, yl, zl);
if ( refl != NULL ) {
add_refl_to_list(refl, reflections);
@@ -308,13 +312,18 @@ void update_partialities(struct image *image)
{
Reflection *vals;
double r1, r2, p, x, y;
+ double xl, yl, zl;
signed int h, k, l;
int clamp1, clamp2;
get_symmetric_indices(refl, &h, &k, &l);
- vals = check_reflection(image, h, k, l,
- asx,asy,asz,bsx,bsy,bsz,csx,csy,csz);
+ /* Get the coordinates of the reciprocal lattice point */
+ xl = h*asx + k*bsx + l*csx;
+ yl = h*asy + k*bsy + l*csy;
+ zl = h*asz + k*bsz + l*csz;
+
+ vals = check_reflection(image, h, k, l, xl, yl, zl);
if ( vals == NULL ) {
set_redundancy(refl, 0);