diff options
| author | Thomas White <taw@physics.org> | 2016-06-30 13:37:21 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2016-07-01 10:19:37 +0200 |
| commit | 2f8a70c3a0f85509dbda25d5511cd0a615a174dc (patch) | |
| tree | 3f93f435fbf9e5c0cad15b49bc5fe0ab590537a0 /libcrystfel/src/hdf5-file.c | |
| parent | cc371ca9a1c26771213ed0a91282fbe264e1bdc7 (diff) | |
Provide dataspace when reading data, mask and satmap
Diffstat (limited to 'libcrystfel/src/hdf5-file.c')
| -rw-r--r-- | libcrystfel/src/hdf5-file.c | 13 |
1 files changed, 9 insertions, 4 deletions
diff --git a/libcrystfel/src/hdf5-file.c b/libcrystfel/src/hdf5-file.c index 95da2353..70e8cafe 100644 --- a/libcrystfel/src/hdf5-file.c +++ b/libcrystfel/src/hdf5-file.c @@ -1395,9 +1395,10 @@ int hdf5_read2(struct hdfile *f, struct image *image, struct event *ev, int hsi; struct dim_structure *hsd; herr_t check; - hid_t dataspace; + hid_t dataspace, memspace; int fail; struct panel *p; + hsize_t dims[2]; p = &image->det->panels[pi]; @@ -1481,6 +1482,10 @@ int hdf5_read2(struct hdfile *f, struct image *image, struct event *ev, return 1; } + dims[0] = p->h; + dims[1] = p->w; + memspace = H5Screate_simple(2, dims, NULL); + image->dp[pi] = malloc(p->w*p->h*sizeof(float)); image->sat[pi] = malloc(p->w*p->h*sizeof(float)); if ( (image->dp[pi] == NULL) || (image->sat[pi] == NULL) ) { @@ -1491,7 +1496,7 @@ int hdf5_read2(struct hdfile *f, struct image *image, struct event *ev, } for ( i=0; i<p->w*p->h; i++ ) image->sat[pi][i] = INFINITY; - r = H5Dread(f->dh, H5T_NATIVE_FLOAT, H5S_ALL, dataspace, + r = H5Dread(f->dh, H5T_NATIVE_FLOAT, memspace, dataspace, H5P_DEFAULT, image->dp[pi]); if ( r < 0 ) { ERROR("Couldn't read data for panel %s\n", @@ -1503,7 +1508,7 @@ int hdf5_read2(struct hdfile *f, struct image *image, struct event *ev, if ( p->mask != NULL ) { int *flags = malloc(p->w*p->h*sizeof(int)); - r = H5Dread(f->dh, H5T_NATIVE_FLOAT, H5S_ALL, dataspace, + r = H5Dread(f->dh, H5T_NATIVE_FLOAT, memspace, dataspace, H5P_DEFAULT, flags); if ( r < 0 ) { ERROR("Couldn't read flags for panel %s\n", @@ -1518,7 +1523,7 @@ int hdf5_read2(struct hdfile *f, struct image *image, struct event *ev, } if ( p->satmap != NULL ) { - r = H5Dread(f->dh, H5T_NATIVE_FLOAT, H5S_ALL, dataspace, + r = H5Dread(f->dh, H5T_NATIVE_FLOAT, memspace, dataspace, H5P_DEFAULT, image->sat[pi]); if ( r < 0 ) { ERROR("Couldn't read satmap for panel %s\n", |