diff options
author | Thomas White <taw@physics.org> | 2024-01-16 12:03:15 +0100 |
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committer | Thomas White <taw@physics.org> | 2024-02-06 16:59:34 +0100 |
commit | 4ad424f132dc3311502567e58b695fecdeb10106 (patch) | |
tree | 94fc0c1fe085de5f7e8553dced1f1b2a235fdf92 /libcrystfel/src/integration.c | |
parent | 5960cc81e3e35e4d38fdd720680c98bef070d695 (diff) |
Use libcrystfel memory allocation routines everywhere
Diffstat (limited to 'libcrystfel/src/integration.c')
-rw-r--r-- | libcrystfel/src/integration.c | 70 |
1 files changed, 35 insertions, 35 deletions
diff --git a/libcrystfel/src/integration.c b/libcrystfel/src/integration.c index 3912114a..cad0a75c 100644 --- a/libcrystfel/src/integration.c +++ b/libcrystfel/src/integration.c @@ -393,7 +393,7 @@ static int alloc_boxes(struct intcontext *ic, int new_max_boxes) { struct peak_box *boxes_new; - boxes_new = realloc(ic->boxes, sizeof(struct peak_box)*new_max_boxes); + boxes_new = cfrealloc(ic->boxes, sizeof(struct peak_box)*new_max_boxes); if ( boxes_new == NULL ) return 1; ic->boxes = boxes_new; @@ -467,7 +467,7 @@ struct intcontext *intcontext_new(struct image *image, int i; struct intcontext *ic; - ic = malloc(sizeof(struct intcontext)); + ic = cfmalloc(sizeof(struct intcontext)); if ( ic == NULL ) return NULL; ic->halfw = ir_out; @@ -481,36 +481,36 @@ struct intcontext *intcontext_new(struct image *image, ic->int_diag = INTDIAG_NONE; ic->w = 2*ic->halfw + 1; - ic->bm = malloc(ic->w * ic->w * sizeof(enum boxmask_val)); + ic->bm = cfmalloc(ic->w * ic->w * sizeof(enum boxmask_val)); if ( ic->bm == NULL ) { ERROR("Failed to allocate box mask.\n"); - free(ic); + cffree(ic); return NULL; } /* How many reference profiles? */ ic->n_reference_profiles = 1; - ic->reference_profiles = calloc(ic->n_reference_profiles, - sizeof(double *)); + ic->reference_profiles = cfcalloc(ic->n_reference_profiles, + sizeof(double *)); if ( ic->reference_profiles == NULL ) { - free(ic); + cffree(ic); return NULL; } - ic->reference_den = calloc(ic->n_reference_profiles, sizeof(double *)); + ic->reference_den = cfcalloc(ic->n_reference_profiles, sizeof(double *)); if ( ic->reference_den == NULL ) { - free(ic); + cffree(ic); return NULL; } - ic->n_profiles_in_reference = calloc(ic->n_reference_profiles, - sizeof(int)); + ic->n_profiles_in_reference = cfcalloc(ic->n_reference_profiles, + sizeof(int)); if ( ic->n_profiles_in_reference == NULL ) { - free(ic); + cffree(ic); return NULL; } for ( i=0; i<ic->n_reference_profiles; i++ ) { - ic->reference_profiles[i] = malloc(ic->w*ic->w*sizeof(double)); + ic->reference_profiles[i] = cfmalloc(ic->w*ic->w*sizeof(double)); if ( ic->reference_profiles[i] == NULL ) return NULL; - ic->reference_den[i] = malloc(ic->w*ic->w*sizeof(double)); + ic->reference_den[i] = cfmalloc(ic->w*ic->w*sizeof(double)); if ( ic->reference_den[i] == NULL ) return NULL; } zero_profiles(ic); @@ -519,7 +519,7 @@ struct intcontext *intcontext_new(struct image *image, ic->n_boxes = 0; ic->max_boxes = 0; if ( alloc_boxes(ic, 32) ) { - free(ic); + cffree(ic); return NULL; } @@ -534,20 +534,20 @@ void intcontext_free(struct intcontext *ic) int i; for ( i=0; i<ic->n_boxes; i++ ) { - free(ic->boxes[i].bm); + cffree(ic->boxes[i].bm); gsl_matrix_free(ic->boxes[i].bgm); } - free(ic->boxes); + cffree(ic->boxes); for ( i=0; i<ic->n_reference_profiles; i++ ) { - free(ic->reference_profiles[i]); - free(ic->reference_den[i]); - } - free(ic->reference_profiles); - free(ic->reference_den); - free(ic->n_profiles_in_reference); - free(ic->bm); - free(ic); + cffree(ic->reference_profiles[i]); + cffree(ic->reference_den[i]); + } + cffree(ic->reference_profiles); + cffree(ic->reference_den); + cffree(ic->n_profiles_in_reference); + cffree(ic->bm); + cffree(ic); } @@ -604,7 +604,7 @@ static void delete_box(struct intcontext *ic, struct peak_box *bx) return; } - free(bx->bm); + cffree(bx->bm); gsl_matrix_free(bx->bgm); memmove(&ic->boxes[i], &ic->boxes[i+1], @@ -803,7 +803,7 @@ static int check_box(struct intcontext *ic, struct peak_box *bx, int *sat) if ( sat != NULL ) *sat = 0; - bx->bm = malloc(ic->w*ic->w*sizeof(enum boxmask_val)); + bx->bm = cfmalloc(ic->w*ic->w*sizeof(enum boxmask_val)); if ( bx->bm == NULL ) { ERROR("Failed to allocate box mask\n"); return 1; @@ -980,7 +980,7 @@ static int center_and_check_box(struct intcontext *ic, struct peak_box *bx, t_offs_fs += ifs; t_offs_ss += iss; - free(bx->bm); + cffree(bx->bm); if ( check_box(ic, bx, sat) ) { return 1; } @@ -1515,7 +1515,7 @@ static double estimate_resolution(Crystal *cr, struct image *image) UnitCell *cell; - acc = malloc(max_acc*sizeof(double)); + acc = cfmalloc(max_acc*sizeof(double)); if ( acc == NULL ) { ERROR("Allocation failed during estimate_resolution!\n"); return INFINITY; @@ -1577,7 +1577,7 @@ static double estimate_resolution(Crystal *cr, struct image *image) if ( n_acc < 3 ) { STATUS("WARNING: Too few peaks to estimate resolution.\n"); - free(acc); + cffree(acc); return 0.0; } @@ -1587,7 +1587,7 @@ static double estimate_resolution(Crystal *cr, struct image *image) if ( n < 2 ) n = 2; max_res = acc[(n_acc-1)-n]; - free(acc); + cffree(acc); return max_res; } @@ -1711,7 +1711,7 @@ void integrate_all_5(struct image *image, IntegrationMethod meth, } for ( i=0; i<image->detgeom->n_panels; i++ ) { - free(masks[i]); + cffree(masks[i]); } } @@ -1794,7 +1794,7 @@ char *str_integration_method(IntegrationMethod m) strcat(tmp, "-grad"); } - return strdup(tmp); + return cfstrdup(tmp); } @@ -1854,10 +1854,10 @@ IntegrationMethod integration_method(const char *str, int *err) return INTEGRATION_NONE; } - free(methods[i]); + cffree(methods[i]); } - free(methods); + cffree(methods); return meth; |