diff options
| author | Thomas White <taw@physics.org> | 2017-07-06 17:22:11 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2017-07-06 17:24:59 +0200 |
| commit | 5292f57d4434c7267e8d945871513d742ff42427 (patch) | |
| tree | d460aa5cef5a501516876850ef243cfc27313d5a /libcrystfel/src/peaks.c | |
| parent | 48d4a6b8e82cce81222ec58fdfb488ed79ce0bcf (diff) | |
| parent | dc3395900fc3ce0d3961757628ff83ad6456be19 (diff) | |
Merge branch 'master' into taketwo
Diffstat (limited to 'libcrystfel/src/peaks.c')
| -rw-r--r-- | libcrystfel/src/peaks.c | 28 |
1 files changed, 25 insertions, 3 deletions
diff --git a/libcrystfel/src/peaks.c b/libcrystfel/src/peaks.c index cb2a9f5a..28c79538 100644 --- a/libcrystfel/src/peaks.c +++ b/libcrystfel/src/peaks.c @@ -3,7 +3,7 @@ * * Peak search and other image analysis * - * Copyright © 2012-2016 Deutsches Elektronen-Synchrotron DESY, + * Copyright © 2012-2017 Deutsches Elektronen-Synchrotron DESY, * a research centre of the Helmholtz Association. * Copyright © 2012 Richard Kirian * @@ -12,6 +12,7 @@ * 2012 Kenneth Beyerlein <kenneth.beyerlein@desy.de> * 2011 Andrew Martin <andrew.martin@desy.de> * 2011 Richard Kirian + * 2017 Valerio Mariani <valerio.mariani@desy.de> * * This file is part of CrystFEL. * @@ -52,6 +53,7 @@ #include "reflist-utils.h" #include "cell-utils.h" #include "geometry.h" +#include "peakfinder8.h" static int cull_peaks_in_panel(struct image *image, struct panel *p) @@ -517,8 +519,8 @@ static void search_peaks_in_panel(struct image *image, float threshold, void search_peaks(struct image *image, float threshold, float min_gradient, - float min_snr, double ir_inn, double ir_mid, double ir_out, - int use_saturated) + float min_snr, double ir_inn, double ir_mid, + double ir_out, int use_saturated) { int i; @@ -541,6 +543,26 @@ void search_peaks(struct image *image, float threshold, float min_gradient, } +int search_peaks_peakfinder8(struct image *image, int max_n_peaks, + float threshold, float min_snr, + int min_pix_count, int max_pix_count, + int local_bg_radius, int min_res, + int max_res, int use_saturated) +{ + if ( image->features != NULL ) { + image_feature_list_free(image->features); + } + image->features = image_feature_list_new(); + image->num_peaks = 0; + image->num_saturated_peaks = 0; + + return peakfinder8(image, max_n_peaks, threshold, min_snr, + min_pix_count, max_pix_count, + local_bg_radius, min_res, + max_res, use_saturated); +} + + int peak_sanity_check(struct image *image, Crystal **crystals, int n_cryst) { int n_feat = 0; |