diff options
| author | Takanori Nakane <nakane.t@gmail.com> | 2014-11-13 17:41:57 +0900 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2014-11-13 15:33:48 +0100 |
| commit | 4dffb961d66acb8096eb4342d8e6b374a3d56793 (patch) | |
| tree | cd5ecdeb5c0a94910c975386c933f36b9a82b5f3 /libcrystfel | |
| parent | c3291ba5b92d092242144b57e818cc9cadf689ec (diff) | |
Fix stream reader
Diffstat (limited to 'libcrystfel')
| -rw-r--r-- | libcrystfel/src/stream.c | 18 |
1 files changed, 7 insertions, 11 deletions
diff --git a/libcrystfel/src/stream.c b/libcrystfel/src/stream.c index dfa1bebe..0489fc97 100644 --- a/libcrystfel/src/stream.c +++ b/libcrystfel/src/stream.c @@ -147,7 +147,7 @@ static int read_peaks_2_3(FILE *fh, struct image *image) } add_x = x-p->orig_min_fs+p->min_fs; - add_y = x-p->orig_min_ss+p->min_ss; + add_y = y-p->orig_min_ss+p->min_ss; image_add_feature(image->features, add_x, add_y, image, intensity, NULL); @@ -238,10 +238,8 @@ static RefList *read_stream_reflections_2_3(FILE *fh, struct detector *det) char line[1024]; signed int h, k, l; - float intensity, sigma, fs, ss; - char phs[1024]; + float intensity, sigma, fs, ss, pk, bg; char pn[32]; - int cts; int r; Reflection *refl; @@ -251,9 +249,9 @@ static RefList *read_stream_reflections_2_3(FILE *fh, struct detector *det) if ( strcmp(line, REFLECTION_END_MARKER) == 0 ) return out; - r = sscanf(line, "%i %i %i %f %s %f %i %f %f %s", - &h, &k, &l, &intensity, phs, &sigma, &cts, - &fs, &ss, pn); + r = sscanf(line, "%i %i %i %f %f %f %f %f %f %s", + &h, &k, &l, &intensity, &sigma, &pk, &bg, &fs, &ss, pn); + if ( (r != 10) && (!first) ) { reflist_free(out); return NULL; @@ -277,10 +275,8 @@ static RefList *read_stream_reflections_2_3(FILE *fh, struct detector *det) set_detector_pos(refl, 0.0, write_fs, write_ss); } set_esd_intensity(refl, sigma); - set_redundancy(refl, cts); - ph = strtod(phs, &v); - if ( v != phs ) set_phase(refl, deg2rad(ph)); - + set_peak(refl, pk); + set_mean_bg(refl, bg); } } while ( rval != NULL ); |