diff options
| author | Thomas White <taw@physics.org> | 2014-03-26 17:48:47 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2014-03-26 17:48:47 +0100 |
| commit | fddfbb4fd069d914865afc53053574b87ba2d552 (patch) | |
| tree | 6523ca8cd5d9c1c65d4064b433e4197f41aad8ac /libcrystfel | |
| parent | 372c7db873ffbc538591d66ff1c7a1fc5d390a65 (diff) | |
indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr
Diffstat (limited to 'libcrystfel')
| -rw-r--r-- | libcrystfel/src/peaks.c | 5 | ||||
| -rw-r--r-- | libcrystfel/src/peaks.h | 2 |
2 files changed, 4 insertions, 3 deletions
diff --git a/libcrystfel/src/peaks.c b/libcrystfel/src/peaks.c index 0f5d96a6..6e5d09dd 100644 --- a/libcrystfel/src/peaks.c +++ b/libcrystfel/src/peaks.c @@ -661,7 +661,8 @@ int peak_sanity_check(struct image *image, Crystal **crystals, int n_cryst) void validate_peaks(struct image *image, double min_snr, - int ir_inn, int ir_mid, int ir_out, int use_saturated) + int ir_inn, int ir_mid, int ir_out, int use_saturated, + int check_snr) { int i, n; ImageFeatureList *flist; @@ -718,7 +719,7 @@ void validate_peaks(struct image *image, double min_snr, continue; } - if ( fabs(intensity)/sigma < min_snr ) { + if ( check_snr && (fabs(intensity)/sigma < min_snr) ) { n_snr++; continue; } diff --git a/libcrystfel/src/peaks.h b/libcrystfel/src/peaks.h index 09ad5245..433f7d1f 100644 --- a/libcrystfel/src/peaks.h +++ b/libcrystfel/src/peaks.h @@ -50,7 +50,7 @@ extern int peak_sanity_check(struct image *image, Crystal **crystals, extern void validate_peaks(struct image *image, double min_snr, int ir_inn, int ir_mid, int ir_out, - int use_saturated); + int use_saturated, int check_snr); extern int integrate_peak(struct image *image, int cfs, int css, double *pfs, double *pss, |