Merge branch 'master' into taketwo

1 files changed, 47 insertions, 0 deletions

diff --git a/scripts/sum-peaks b/scripts/sum-peaks
new file mode 100755
index 00000000..eccb9fc6
--- /dev/null
+++ b/scripts/sum-peaks
@@ -0,0 +1,47 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# Generate "peak powder" from CrystFEL stream
+#
+# Copyright © 2017 Deutsches Elektronen-Synchrotron DESY,
+#                  a research centre of the Helmholtz Association.
+#
+# Author:
+#    2017 Thomas White <taw@physics.org>
+#
+
+import numpy as np
+import h5py
+import sys
+import re
+
+f = open(sys.argv[1], 'r')
+powder = np.zeros((512,1024), dtype=float)
+peaks = []
+
+prog1 = re.compile("^\s*([\d\-\.]+)\s+([\d\-\.]+)\s+[\d\-\.]+\s+([\d\-\.]+)\s+\S+$")
+
+while True:
+
+    fline = f.readline()
+    if not fline:
+        break
+
+    if fline == '----- End chunk -----\n':
+        if len(peaks) > 10:
+            for p in peaks:
+                powder[p[1],p[0]] += p[2]
+        peaks = []
+
+    match = prog1.match(fline)
+    if match:
+        fs = int(float(match.group(1)))
+        ss = int(float(match.group(2)))
+        intensity = float(match.group(3))
+        peaks.append((fs,ss,intensity))
+
+f.close()
+
+fh = h5py.File("summed-peaks.h5", "w")
+fh.create_dataset("/data", (512,1024), data=powder)
+fh.close()