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| author | Thomas White <taw@physics.org> | 2021-03-04 14:48:17 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2021-03-04 14:48:17 +0100 |
| commit | 7ad46ee64f13892667c370c1f06f94a3f4e42d76 (patch) | |
| tree | d83a56c0abfa4b526fa9afde07742b914fdbb8f0 /src/gui_backend_slurm.c | |
| parent | bbb08bef7ede9050c23a0309475d170a68631d6e (diff) | |
SLURM: Set serial offset for indexamajig jobs
Diffstat (limited to 'src/gui_backend_slurm.c')
| -rw-r--r-- | src/gui_backend_slurm.c | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/src/gui_backend_slurm.c b/src/gui_backend_slurm.c index f9e5d0a1..57e8686f 100644 --- a/src/gui_backend_slurm.c +++ b/src/gui_backend_slurm.c @@ -579,6 +579,7 @@ static void *run_indexing(const char *job_title, char *sc_filename; int n_blocks; char array_inx[128]; + char serial_offs[128]; workdir = make_job_folder(job_title, job_notes); if ( workdir == NULL ) return NULL; @@ -621,13 +622,15 @@ static void *run_indexing(const char *job_title, if ( sc_filename == NULL ) return NULL; snprintf(array_inx, 127, "0-%i", n_blocks-1); + snprintf(serial_offs, 127, "$((${SLURM_ARRAY_TASK_ID}*%i))", + opts->block_size); if ( !write_indexamajig_script(sc_filename, proj->geom_filename, "`nproc`", "files-${SLURM_ARRAY_TASK_ID}.lst", "crystfel-${SLURM_ARRAY_TASK_ID}.stream", - 0, + serial_offs, 0, &proj->peak_search_params, &proj->indexing_params) ) { |