diff options
| author | Thomas White <taw@physics.org> | 2010-03-18 11:05:41 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2010-03-18 11:05:41 +0100 |
| commit | 88c08418710ab2c72d51f6fce13ad2d78e0706f6 (patch) | |
| tree | a6e7451341a1bda9307c1c71eb77a1cae898699f /src/indexamajig.c | |
| parent | 7678f34afc9df872af539d56c8110e578e683b08 (diff) | |
Separate CM subtraction and noise filter
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 22 |
1 files changed, 15 insertions, 7 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 7c227cb1..ac5fb0ae 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -49,6 +49,8 @@ static void show_help(const char *s) " dirax : invoke DirAx\n" "\n" " --verbose Be verbose about indexing.\n" +" --gpu Use the GPU to speed up the simulation.\n" +"\n" " --write-drx Write 'xfel.drx' for visualisation of reciprocal\n" " space. Implied by any indexing method other than\n" " 'none'. Beware: the units in this file are\n" @@ -57,9 +59,13 @@ static void show_help(const char *s) " --near-bragg Output a list of reflection intensities to stdout.\n" " --simulate Simulate the diffraction pattern using the indexed\n" " unit cell.\n" -" --gpu Use the GPU to speed up the simulation.\n" -" --clean-image Perform common-mode noise subtraction and\n" -" background removal on images before proceeding.\n" +" --filter-cm Perform common-mode noise subtraction on images\n" +" before proceeding. Intensities will be extracted\n" +" from the image as it is after this processing.\n" +" --filter-noise Apply an aggressive noise filter which sets all\n" +" pixels in each 3x3 region to zero if any of them\n" +" have negative values. Intensity measurement will\n" +" be performed on the image as it was before this.\n" " --no-match Don't attempt to match the indexed cell to the\n" " model, just proceed with the one generated by the\n" " auto-indexing procedure.\n" @@ -170,7 +176,8 @@ int main(int argc, char *argv[]) int config_nearbragg = 0; int config_writedrx = 0; int config_simulate = 0; - int config_clean = 0; + int config_cmfilter = 0; + int config_noisefilter = 0; int config_nomatch = 0; int config_gpu = 0; int config_verbose = 0; @@ -190,7 +197,8 @@ int main(int argc, char *argv[]) {"write-drx", 0, &config_writedrx, 1}, {"indexing", 1, NULL, 'z'}, {"simulate", 0, &config_simulate, 1}, - {"clean-image", 0, &config_clean, 1}, + {"filter-cm", 0, &config_cmfilter, 1}, + {"filter-noise", 0, &config_noisefilter, 1}, {"no-match", 0, &config_nomatch, 1}, {"verbose", 0, &config_verbose, 1}, {"alternate", 0, &config_alternate, 1}, @@ -296,8 +304,8 @@ int main(int argc, char *argv[]) hdf5_read(hdfile, &image); - if ( config_clean ) { - clean_image(&image); + if ( config_cmfilter ) { + filter_cm(&image); } /* Perform 'fine' peak search */ |