diff options
| author | Thomas White <taw@physics.org> | 2011-11-16 11:09:22 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2012-02-22 15:27:41 +0100 |
| commit | b2a2bf8d82fbc829f406d4ed05575505b0331bb1 (patch) | |
| tree | 910f08897fb4a73fccc57542d6befe7630778e2a /src/partialator.c | |
| parent | 8737092e3406f9d4b792c11b186b11f2a1548a69 (diff) | |
partialator: Add --no-scale option
Diffstat (limited to 'src/partialator.c')
| -rw-r--r-- | src/partialator.c | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/src/partialator.c b/src/partialator.c index bfbf6ae4..c8cede82 100644 --- a/src/partialator.c +++ b/src/partialator.c @@ -58,6 +58,7 @@ static void show_help(const char *s) " an HDF5 file.\n" " -y, --symmetry=<sym> Merge according to symmetry <sym>.\n" " -n, --iterations=<n> Run <n> cycles of scaling and post-refinement.\n" +" --no-scale Fix all the scaling factors at unity.\n" " -r, --reference=<file> Refine images against reflections in <file>,\n" " instead of taking the mean of the intensity\n" " estimates.\n" @@ -279,6 +280,7 @@ int main(int argc, char *argv[]) int have_reference = 0; char cmdline[1024]; SRContext *sr; + int noscale = 0; /* Long options */ const struct option longopts[] = { @@ -289,6 +291,7 @@ int main(int argc, char *argv[]) {"beam", 1, NULL, 'b'}, {"symmetry", 1, NULL, 'y'}, {"iterations", 1, NULL, 'n'}, + {"no-scale", 0, &noscale, 1}, {"reference", 1, NULL, 'r'}, {0, 0, NULL, 0} }; @@ -485,8 +488,9 @@ int main(int argc, char *argv[]) /* Make initial estimates */ STATUS("Performing initial scaling.\n"); + if ( noscale ) STATUS("Scale factors fixed at 1.\n"); full = scale_intensities(images, n_usable_patterns, reference, - nthreads); + nthreads, noscale); sr = sr_titlepage(images, n_usable_patterns, "scaling-report.pdf", infile, cmdline); @@ -524,7 +528,7 @@ int main(int argc, char *argv[]) /* Re-estimate all the full intensities */ reflist_free(full); full = scale_intensities(images, n_usable_patterns, - reference, nthreads); + reference, nthreads, noscale); sr_iteration(sr, i+1, images, n_usable_patterns, full); |