diff options
| author | Thomas White <taw@physics.org> | 2018-04-20 11:27:07 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2018-04-20 17:36:40 +0200 |
| commit | 7c0a1228c1254db06e0f5956cdc9691e86033cda (patch) | |
| tree | d732530d017b621966abde70aca4b2aaf50311e5 /src | |
| parent | 8314534edc2f5076239d2ee39833d84df2b8be9c (diff) | |
Restore peak alignment check and unset multi-lattice indexing as default
Unfortunately, they seem to be severely reducing data quality.
Partially reverts 60c48f3876b0d3c30bf729ce691dbd3f56665c4c
Diffstat (limited to 'src')
| -rw-r--r-- | src/indexamajig.c | 13 |
1 files changed, 8 insertions, 5 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index a6651497..3cfe2c6e 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -124,11 +124,11 @@ static void show_help(const char *s) " --no-check-cell Don't check lattice parameters against input cell\n" " --no-cell-combinations\n" " Don't use axis combinations when checking cell\n" -" --no-multi Don't repeat indexing to index multiple hits\n" +" --multi Repeat indexing to index multiple hits\n" " --no-retry Don't repeat indexing to increase indexing rate\n" " --no-refine Skip the prediction refinement step\n" -" --check-peaks Check that most of the peaks can be accounted for\n" -" by the indexing solution\n" +" --no-check-peaks Don't check that most of the peaks can be accounted\n" +" for by the indexing solution\n" "\n" " --taketwo-member-threshold\n" " Minimum number of members in network\n" @@ -239,8 +239,8 @@ int main(int argc, char *argv[]) int if_refine = 1; int if_nocomb = 0; int if_nocheck = 0; - int if_peaks = 0; - int if_multi = 1; + int if_peaks = 1; + int if_multi = 0; int if_retry = 1; int serial_start = 1; @@ -343,8 +343,11 @@ int main(int argc, char *argv[]) {"no-check-cell", 0, &if_nocheck, 1}, {"no-cell-check", 0, &if_nocheck, 1}, {"check-peaks", 0, &if_peaks, 1}, + {"no-check-peaks", 0, &if_peaks, 0}, {"no-retry", 0, &if_retry, 0}, + {"retry", 0, &if_retry, 1}, {"no-multi", 0, &if_multi, 0}, + {"multi", 0, &if_multi, 1}, {"overpredict", 0, &iargs.overpredict, 1}, /* Long-only options which don't actually do anything */ |