diff options
| author | Thomas White <taw@physics.org> | 2018-06-18 14:59:49 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2018-06-18 15:03:09 +0200 |
| commit | da7edab59513c5e3f7148fc81562382a7a715e2c (patch) | |
| tree | c3a55320a58c8bfc8d190009efc85c8ab2cec4fc /src | |
| parent | 8dee365590e04f3f8948dc9f2a72ed55bc4534a5 (diff) | |
indexamajig: Tidy up --help
Diffstat (limited to 'src')
| -rw-r--r-- | src/indexamajig.c | 61 |
1 files changed, 26 insertions, 35 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 424ac474..f4d99f83 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -110,13 +110,16 @@ static void show_help(const char *s) " (peakfinder8 only) Default: 0\n" " --max-res=<n> Maximum resolution for peak search (in pixels)\n" " (peakfinder8 only) Default: 1200\n" -" --min-snr-biggest-pix=<n> (peakFinder9 only) min snr of the biggest pixel in " -" the peak\n" -" --min-snr-peak-pix=<n> (peakFinder9 only) min snr of a peak pixel\n" -" --min-sig=<n> (peakFinder9 only) minimum standard deviation of " -" the background\n" -" --min-peak-over-neighbour=<n> (peakFinder9 only) just for speed. Biggest pixel" -" in peak must be n higher than this.\n" +" --min-snr-biggest-pix=<n>\n" +" Minimum snr of the biggest pixel in the peak\n" +" (peakfinder9 only)\n" +" --min-snr-peak-pix=<n>\n" +" Minimum snr of a peak pixel (peakfinder9 only)\n" +" --min-sig=<n> Minimum standard deviation of the background\n" +" (peakfinder9 only)\n" +" --min-peak-over-neighbour=<n>\n" +" Just for speed. Biggest pixel in peak must be n\n" +" higher than this (peakfinder9 only).\n" " --no-use-saturated Reject saturated peaks\n" " --no-revalidate Don't re-integrate and check HDF5 peaks\n" " --no-half-pixel-shift\n" @@ -172,35 +175,23 @@ static void show_help(const char *s) " --felix-tthrange-min Minimum 2theta to consider for indexing (degrees)\n" " Default: 0\n" "\n" -" --xgandalf-sampling-pitch-selector \n" -" Sampling pitch selector \n" -" [0-4](extremelyLoose to extremelyDense)\n" -" [5-7](standardWithSeondaryMillerIndices\n" -" to extremelyDenseWithSeondaryMillerIndices)\n" -" Default is 6\n" -" --xgandalf-grad-desc-iterations-selector \n" -" Gradient descent iterations selector \n" -" [0-5] (veryFew to extremelyMany)\n" -" Default is 4 (manyMany)" +" --xgandalf-sampling-pitch\n" +" Sampling pitch: 0 (loosest) to 7 (most dense)\n" +" Default: 6\n" +" --xgandalf-grad-desc-iterations\n" +" Gradient descent iterations: 0 (few) to 5 (many)\n" +" Default: 4\n" " --xgandalf-tolerance Relative tolerance of the lattice vectors.\n" -" Default is 0.02\n" -" --xgandalf-no-deviation-from-provided-cell fitted cell will have the\n" -" same lattice parameters as\n" -" the provided one\n" -" --xgandalf-min-lattice-vector-length " -" Minimum possible lattice vector length in A.\n" -" Used for fitting without prior lattice\n" -" as starting point for gradient descent,\n" -" so the final minimum lattice vector length\n" -" can be smaller.\n" -" Default: 30A\n" -" --xgandalf-max-lattice-vector-length " -" Maximum possible lattice vector length in A.\n" -" Used for fitting without prior lattice\n" -" as starting point for gradient descent,\n" -" so the final maximum lattice vector length\n" -" can be bigger.\n" -" Default: 250A\n" +" Default is 0.02\n" +" --xgandalf-no-deviation-from-provided-cell\n" +" Force the fitted cell to have the same lattice\n" +" parameters as the provided one\n" +" --xgandalf-min-lattice-vector-length\n" +" Minimum possible lattice vector length in A.\n" +" Default: 30 A\n" +" --xgandalf-max-lattice-vector-length\n" +" Maximum possible lattice vector length in A.\n" +" Default: 250 A\n" "\n" "\nIntegration options:\n\n" " --integration=<meth> Integration method (rings,prof2d)-(cen,nocen)\n" |