diff options
| -rw-r--r-- | doc/man/indexamajig.1 | 3 | ||||
| -rw-r--r-- | src/indexamajig.c | 2 | ||||
| -rw-r--r-- | src/process_image.c | 2 | ||||
| -rw-r--r-- | src/process_image.h | 1 |
4 files changed, 2 insertions, 6 deletions
diff --git a/doc/man/indexamajig.1 b/doc/man/indexamajig.1 index 1d19bfad..37e80801 100644 --- a/doc/man/indexamajig.1 +++ b/doc/man/indexamajig.1 @@ -256,8 +256,7 @@ Set the square of the gradient threshold for peak detection using \fB--peaks=zae .PD 0 .IP \fB--min-snr=\fR\fIsnr\fR .PD - -Set the minimum I/sigma(I) for peak detection when using \fB--peaks=zaef\fR, \fB--peaks=peakfinder8\fR or \fB--peaks=peakfinder9\fR. The default is \fB--min-snr=5\fR for \fB--peaks=zaef\fR and \fB--peaks=peakfinder8\fR, \fB--min-snr=9\fR for \fB--peaks=peakfinder9\fR. +Set the minimum I/sigma(I) for peak detection when using \fB--peaks=zaef\fR, \fB--peaks=peakfinder8\fR or \fB--peaks=peakfinder9\fR. The default is \fB--min-snr=5\fR. .PD 0 .IP \fB--min-snr-biggest-pix=<n>\fR diff --git a/src/indexamajig.c b/src/indexamajig.c index 1b1545a9..4a790a17 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -270,7 +270,6 @@ int main(int argc, char *argv[]) iargs.local_bg_radius = 3; iargs.min_snr_biggest_pix = 7.0; /* peak finder 9 */ iargs.min_snr_peak_pix = 6.0; - iargs.min_snr_whole_peak = 9.0; iargs.min_sig = 11.0; iargs.min_peak_over_neighbour = -INFINITY; iargs.check_hdf5_snr = 0; @@ -521,7 +520,6 @@ int main(int argc, char *argv[]) case 311 : iargs.min_snr = strtof(optarg, NULL); - iargs.min_snr_whole_peak = iargs.min_snr; break; case 313 : diff --git a/src/process_image.c b/src/process_image.c index c12ec3b5..6f4ab192 100644 --- a/src/process_image.c +++ b/src/process_image.c @@ -227,7 +227,7 @@ void process_image(const struct index_args *iargs, struct pattern_args *pargs, if ( search_peaks_peakfinder9(&image, iargs->min_snr_biggest_pix, iargs->min_snr_peak_pix, - iargs->min_snr_whole_peak, + iargs->min_snr, iargs->min_sig, iargs->min_peak_over_neighbour, iargs->local_bg_radius) ) diff --git a/src/process_image.h b/src/process_image.h index 7b050e83..52f063fd 100644 --- a/src/process_image.h +++ b/src/process_image.h @@ -87,7 +87,6 @@ struct index_args int min_peaks; float min_snr_biggest_pix; float min_snr_peak_pix; - float min_snr_whole_peak; float min_sig; float min_peak_over_neighbour; struct imagefile_field_list *copyme; |