diff options
Diffstat (limited to 'julia/CrystFEL/src/indexing.jl')
| -rw-r--r-- | julia/CrystFEL/src/indexing.jl | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/julia/CrystFEL/src/indexing.jl b/julia/CrystFEL/src/indexing.jl index 7dabd15c..543246ec 100644 --- a/julia/CrystFEL/src/indexing.jl +++ b/julia/CrystFEL/src/indexing.jl @@ -34,6 +34,17 @@ function indexflags(retry, multilattice, refine, peakcheck, cellcheck) end +""" + Indexer(methods, dtempl, cell; + tolerances=(0.05,0.05,0.05,1.5,1.5,1.5), + retry=true, multilattice=false, refine=true, + peakcheck=true, cellcheck=true, + wavelength_estimate=nothing, clen_estimate=missing, + n_threads=1) + +Creates a new CrystFEL indexing engine, which you can later apply to CrystFEL +`Image` structures using `index()`. +""" function Indexer(methods, dtempl, cell; tolerances=(0.05,0.05,0.05,1.5,1.5,1.5), retry=true, multilattice=false, refine=true, peakcheck=true, cellcheck=true, wavelength_estimate=nothing, clen_estimate=missing, n_threads=1) @@ -113,6 +124,14 @@ function Indexer(methods, dtempl, cell; tolerances=(0.05,0.05,0.05,1.5,1.5,1.5), end +""" + index(image::Image, indexer::Indexer; mille=nothing) + +Index `image` using `indexer`. + +If `mille` is a valid `Mille` object, detector geometry alignment data will +be written. +""" function index(image::Image, idxr::Indexer; mille=nothing) if mille === nothing |