diff options
Diffstat (limited to 'libcrystfel/src/indexers/pinkindexer.c')
| -rw-r--r-- | libcrystfel/src/indexers/pinkindexer.c | 15 |
1 files changed, 9 insertions, 6 deletions
diff --git a/libcrystfel/src/indexers/pinkindexer.c b/libcrystfel/src/indexers/pinkindexer.c index 69905c35..03442764 100644 --- a/libcrystfel/src/indexers/pinkindexer.c +++ b/libcrystfel/src/indexers/pinkindexer.c @@ -104,15 +104,18 @@ int run_pinkIndexer(struct image *image, void *ipriv) } reciprocalPeaks_1_per_A->peakCount = 0; for (int i = 0; i < peakCountMax && i < MAX_PEAK_COUNT_FOR_INDEXER; i++) { + struct imagefeature *f; + double r[3]; + f = image_get_feature(image->features, i); - if (f == NULL) { - continue; - } + if ( f == NULL ) continue; - reciprocalPeaks_1_per_A->coordinates_x[reciprocalPeaks_1_per_A->peakCount] = f->rz * 1e-10; - reciprocalPeaks_1_per_A->coordinates_y[reciprocalPeaks_1_per_A->peakCount] = f->rx * 1e-10; - reciprocalPeaks_1_per_A->coordinates_z[reciprocalPeaks_1_per_A->peakCount] = f->ry * 1e-10; + detgeom_transform_coords(&image->detgeom->panels[f->pn], + f->fs, f->ss, image->lambda, r); + reciprocalPeaks_1_per_A->coordinates_x[reciprocalPeaks_1_per_A->peakCount] = r[2] * 1e-10; + reciprocalPeaks_1_per_A->coordinates_y[reciprocalPeaks_1_per_A->peakCount] = r[0] * 1e-10; + reciprocalPeaks_1_per_A->coordinates_z[reciprocalPeaks_1_per_A->peakCount] = r[1] * 1e-10; intensities[reciprocalPeaks_1_per_A->peakCount] = (float) (f->intensity); reciprocalPeaks_1_per_A->peakCount++; } |