aboutsummaryrefslogtreecommitdiff
path: root/libcrystfel
diff options
context:
space:
mode:
Diffstat (limited to 'libcrystfel')
-rw-r--r--libcrystfel/src/image.c115
1 files changed, 67 insertions, 48 deletions
diff --git a/libcrystfel/src/image.c b/libcrystfel/src/image.c
index 54171321..e8504f23 100644
--- a/libcrystfel/src/image.c
+++ b/libcrystfel/src/image.c
@@ -660,6 +660,67 @@ static int flag_value(float pixel, struct panel_template *p)
}
+static void mark_bad_regions(struct panel_template *p,
+ float *dp, int *bad,
+ const DataTemplate *dtempl,
+ int i)
+{
+ int p_w, p_h;
+ int fs, ss;
+ fenv_t envp;
+
+ fegetenv(&envp);
+ fesetround(1); /* Round to nearest (for flag_value) */
+
+ p_w = p->orig_max_fs - p->orig_min_fs + 1;
+ p_h = p->orig_max_ss - p->orig_min_ss + 1;
+
+ for ( ss=0; ss<p_h; ss++ ) {
+ for ( fs=0; fs<p_w; fs++ ) {
+ float val = dp[fs+ss*p_w];
+ if ( data_template_in_bad_region(dtempl, i,
+ fs, ss)
+ || isnan(val)
+ || isinf(val)
+ || flag_value(val, p) )
+ {
+ bad[fs+ss*p_w] = 1;
+ }
+ }
+ }
+
+ fesetenv(&envp);
+}
+
+
+static int load_mask(struct panel_template *p,
+ const char *mask_fn,
+ const char *ev,
+ int *bad,
+ unsigned int mask_good,
+ unsigned int mask_bad)
+{
+ if ( is_hdf5_file(mask_fn) ) {
+ image_hdf5_read_mask(p, mask_fn, ev, bad,
+ mask_good, mask_bad);
+
+ } else if ( is_cbf_file(mask_fn) ) {
+ image_cbf_read_mask(p, mask_fn, ev, 0, bad,
+ mask_good, mask_bad);
+
+ } else if ( is_cbfgz_file(mask_fn) ) {
+ image_cbf_read_mask(p, mask_fn, ev, 1, bad,
+ mask_good, mask_bad);
+
+ } else {
+ ERROR("Unrecognised mask file type (%s)\n", mask_fn);
+ return 1;
+ }
+
+ return 0;
+}
+
+
static int create_badmap(struct image *image,
const DataTemplate *dtempl,
int no_mask_data)
@@ -674,7 +735,6 @@ static int create_badmap(struct image *image,
for ( i=0; i<dtempl->n_panels; i++ ) {
- const char *mask_fn;
int p_w, p_h;
struct panel_template *p = &dtempl->panels[i];
@@ -696,64 +756,23 @@ static int create_badmap(struct image *image,
/* Add bad regions (skip if panel is bad anyway) */
if ( !p->bad ) {
-
- int fs, ss;
- fenv_t envp;
-
- fegetenv(&envp);
- fesetround(1); /* Round to nearest
- * (for flag_value) */
-
- for ( fs=0; fs<p_w; fs++ ) {
- for ( ss=0; ss<p_h; ss++ ) {
- float val = image->dp[i][fs+ss*p_w];
- if ( data_template_in_bad_region(dtempl, i, fs, ss)
- || isnan(val)
- || isinf(val)
- || flag_value(val, p) )
- {
- image->bad[i][fs+ss*p_w] = 1;
- }
- }
- }
-
- fesetenv(&envp);
+ mark_bad_regions(p, image->dp[i], image->bad[i],
+ dtempl, i);
}
/* Load mask (skip if panel is bad anyway) */
if ( (!no_mask_data) && (!p->bad) && (p->mask != NULL) )
{
+ const char *mask_fn;
+
if ( p->mask_file == NULL ) {
mask_fn = image->filename;
} else {
mask_fn = p->mask_file;
}
- if ( is_hdf5_file(mask_fn) ) {
- image_hdf5_read_mask(p, mask_fn,
- image->ev,
- image->bad[i],
- dtempl->mask_good,
- dtempl->mask_bad);
-
- } else if ( is_cbf_file(mask_fn) ) {
- image_cbf_read_mask(p, mask_fn,
- image->ev,
- 0, image->bad[i],
- dtempl->mask_good,
- dtempl->mask_bad);
-
- } else if ( is_cbfgz_file(mask_fn) ) {
- image_cbf_read_mask(p, mask_fn,
- image->ev,
- 1, image->bad[i],
- dtempl->mask_good,
- dtempl->mask_bad);
- } else {
- ERROR("Unrecognised mask file type"
- " (%s)\n", mask_fn);
- return 1;
- }
+ load_mask(p, mask_fn, image->ev, image->bad[i],
+ dtempl->mask_good, dtempl->mask_bad);
}
}
return 0;