diff options
Diffstat (limited to 'libcrystfel')
-rw-r--r-- | libcrystfel/CMakeLists.txt | 7 | ||||
-rw-r--r-- | libcrystfel/src/image.c | 159 |
2 files changed, 0 insertions, 166 deletions
diff --git a/libcrystfel/CMakeLists.txt b/libcrystfel/CMakeLists.txt index 014d2a5a..d1d46b81 100644 --- a/libcrystfel/CMakeLists.txt +++ b/libcrystfel/CMakeLists.txt @@ -1,7 +1,6 @@ project(libcrystfel VERSION ${CRYSTFEL_SHORT_VERSION} LANGUAGES C) find_package(Curses) -find_package(CBF) find_package(XGANDALF) find_package(PINKINDEXER) find_package(NBP) @@ -15,7 +14,6 @@ set(HAVE_CURSES ${CURSES_FOUND}) set(HAVE_FFTW ${FFTW_FOUND}) set(HAVE_XGANDALF ${XGANDALF_FOUND}) set(HAVE_FDIP ${FDIP_FOUND}) -set(HAVE_CBFLIB ${CBF_FOUND}) # Find out where forkpty() is declared set(CMAKE_REQUIRED_LIBRARIES "-lutil") @@ -161,11 +159,6 @@ if (FFTW_FOUND) target_link_libraries(${PROJECT_NAME} PRIVATE ${FFTW_LDFLAGS}) endif (FFTW_FOUND) -if (CBF_FOUND) - target_include_directories(${PROJECT_NAME} PRIVATE ${CBF_INCLUDES}) - target_link_libraries(${PROJECT_NAME} PRIVATE ${CBF_LIBRARIES}) -endif (CBF_FOUND) - if (CURSES_FOUND) target_include_directories(${PROJECT_NAME} PRIVATE ${CURSES_INCLUDE_DIRS}) target_link_libraries(${PROJECT_NAME} PRIVATE ${CURSES_LIBRARIES}) diff --git a/libcrystfel/src/image.c b/libcrystfel/src/image.c index 8c47d3cf..2306d6e7 100644 --- a/libcrystfel/src/image.c +++ b/libcrystfel/src/image.c @@ -36,15 +36,6 @@ #include <hdf5.h> #include <zlib.h> -#ifdef HAVE_CBFLIB -#ifdef HAVE_CBFLIB_CBF_H -#include <cbflib/cbf.h> -#endif -#ifdef HAVE_CBF_CBF_H -#include <cbf/cbf.h> -#endif -#endif - #include "image.h" #include "utils.h" #include "events.h" @@ -406,40 +397,6 @@ void add_imagefile_field(struct imagefile_field_list *copyme, const char *name) /******************************* CBF files ************************************/ -#ifdef HAVE_CBFLIB - -static char *cbf_strerr(int e) -{ - char *err; - - err = malloc(1024); - if ( err == NULL ) return NULL; - - err[0] = '\0'; - - /* NB Sum of lengths of all strings must be less than 1024 */ - if ( e & CBF_FORMAT ) strcat(err, "Invalid format"); - if ( e & CBF_ALLOC ) strcat(err, "Memory allocation failed"); - if ( e & CBF_ARGUMENT ) strcat(err, "Invalid argument"); - if ( e & CBF_ASCII ) strcat(err, "Value is ASCII"); - if ( e & CBF_BINARY ) strcat(err, "Value is binary"); - if ( e & CBF_BITCOUNT ) strcat(err, "Wrong number of bits"); - if ( e & CBF_ENDOFDATA ) strcat(err, "End of data"); - if ( e & CBF_FILECLOSE ) strcat(err, "File close error"); - if ( e & CBF_FILEOPEN ) strcat(err, "File open error"); - if ( e & CBF_FILEREAD ) strcat(err, "File read error"); - if ( e & CBF_FILETELL ) strcat(err, "File tell error"); - if ( e & CBF_FILEWRITE ) strcat(err, "File write error"); - if ( e & CBF_IDENTICAL ) strcat(err, "Name already exists"); - if ( e & CBF_NOTFOUND ) strcat(err, "Not found"); - if ( e & CBF_OVERFLOW ) strcat(err, "Overflow"); - if ( e & CBF_UNDEFINED ) strcat(err, "Number undefined"); - if ( e & CBF_NOTIMPLEMENTED ) strcat(err, "Not implemented"); - - return err; -} - - static int unpack_panels(struct image *image, float *data, int data_width, int data_height) { @@ -684,103 +641,6 @@ static float *read_cbf_data(struct imagefile *f, int *w, int *h, cbf_handle *pcb return NULL; } - if ( cbf_make_handle(&cbfh) ) { - ERROR("Failed to allocate CBF handle\n"); - return NULL; - } - - /* CBFlib will call fclose(fh) when it's ready */ - - if ( cbf_read_widefile(cbfh, fh, 0) ) { - ERROR("Failed to read CBF file '%s'\n", f->filename); - cbf_free_handle(cbfh); - return NULL; - } - - /* Select row 0 in data column inside array_data */ - cbf_find_category(cbfh, "array_data"); - cbf_find_column(cbfh, "data"); - cbf_select_row(cbfh, 0); - - /* Get parameters for array read */ - r = cbf_get_integerarrayparameters_wdims(cbfh, &compression, &binary_id, - &elsize, &elsigned, &elunsigned, - &elements, - &minelement, &maxelement, - &byteorder, - &dimfast, &dimmid, &dimslow, - &padding); - if ( r ) { - char *err = cbf_strerr(r); - ERROR("Failed to read CBF array parameters: %s\n", err); - free(err); - cbf_free_handle(cbfh); - return NULL; - } - - if ( dimslow != 0 ) { - ERROR("CBF data array is 3D - don't know what to do with it\n"); - cbf_free_handle(cbfh); - return NULL; - } - - if ( dimfast*dimmid*elsize > 10e9 ) { - ERROR("CBF data is far too big (%i x %i x %i bytes).\n", - (int)dimfast, (int)dimmid, (int)elsize); - cbf_free_handle(cbfh); - return NULL; - } - - if ( (elsize != 4) && (elsize != 2) ) { - STATUS("Don't know what to do with element size %i\n", - (int)elsize); - cbf_free_handle(cbfh); - return NULL; - } - - if ( !elsigned ) { - STATUS("Don't know what to do with unsigned data (yet)\n"); - cbf_free_handle(cbfh); - return NULL; - } - - if ( strcmp(byteorder, "little_endian") != 0 ) { - STATUS("Don't know what to do with non-little-endian datan\n"); - cbf_free_handle(cbfh); - return NULL; - } - - data = malloc(elsize*dimfast*dimmid); - if ( data == NULL ) { - ERROR("Failed to allocate memory for CBF data\n"); - cbf_free_handle(cbfh); - return NULL; - } - - r = cbf_get_integerarray(cbfh, &binary_id, data, elsize, 1, - elsize*dimfast*dimmid, &elread); - if ( r ) { - char *err = cbf_strerr(r); - ERROR("Failed to read CBF array: %s\n", err); - free(err); - cbf_free_handle(cbfh); - return NULL; - } - - if ( elsize == 4 ) { - dataf = convert_sint32_float(data, dimfast, dimmid); - } else if ( elsize == 2 ) { - dataf = convert_sint16_float(data, dimfast, dimmid); - } else { - ERROR("Don't know how to convert element size %i\n", - (int)elsize); - cbf_free_handle(cbfh); - return NULL; - } - - free(data); - - free(buf); /* Might be NULL */ *w = dimfast; *h = dimmid; @@ -857,25 +717,6 @@ static int read_cbf_simple(struct imagefile *f, struct image *image) } -#else /* HAVE_CBFLIB */ - -static int read_cbf_simple(struct imagefile *f, struct image *image) -{ - ERROR("This version of CrystFEL was compiled without CBF support.\n"); - return 1; -} - - -static int read_cbf(struct imagefile *f, struct image *image) -{ - ERROR("This version of CrystFEL was compiled without CBF support.\n"); - return 1; -} - - -#endif /* HAVE_CBFLIB */ - - /****************************** Image files ***********************************/ |