CrystFEL - Data processing for serial crystallography

Age	Commit message (Expand)	Author
2018-02-27	Mark crystals as bad if they don't scale properly	Thomas White
2018-02-27	Use "iteration F" in logs	Thomas White
2018-02-27	Combine pgraph and specgraph into one file for all iterations	Thomas White
2018-02-27	Adjust angle step size	Thomas White
2018-02-27	Add some extra messages	Thomas White
2018-02-27	Tidy up	Thomas White
2018-02-27	Reduce the weight on reflections if they have to be scaled up	Thomas White
2018-02-27	partialator: Stop if reference reflection list can't be loaded	Thomas White
2018-02-27	Weight reflections by partiality in residual	Thomas White
2018-02-27	Verbosity adjustments	Thomas White
2018-02-27	Restore redundancy check	Thomas White
2018-02-27	Use GSL_NAN instead of infinity to indicate failed function evaluation	Thomas White
2018-02-27	Pass serial number and verbosity level down	Thomas White
2018-02-27	New rejection criteria	Thomas White
2018-02-27	Don't complain loudly about scaling failures during refinement	Thomas White
2018-02-27	Show the list of reflections if scaling gives NAN (only if the list is short)	Thomas White
2018-02-27	More reflection criteria	Thomas White
2018-02-27	Iterate over the subject list, not the reference	Thomas White
2018-02-27	More information about dropped reflections in scaling	Thomas White
2018-02-27	Switch to simpler scaling algorithm	Thomas White
2018-02-27	Fix scaling factor in residual()	Thomas White
2018-02-27	Fix const	Thomas White
2018-02-27	Don't scale when told not to	Thomas White
2018-02-27	Scaling fixes	Thomas White
2018-02-27	const-cleanliness (and a bit of error checking)	Thomas White
2018-02-27	partial_sim: Update parameter display	Thomas White
2018-02-27	Add progress bar for scaling to reference	Thomas White
2018-02-27	Residual and scaling fixes	Thomas White
2018-02-27	Find the angles correctly for the 5 degree check	Thomas White
2018-02-27	Fix log scaling	Thomas White
2018-02-27	Set initial OSF for linear scale factors	Thomas White
2018-02-27	Store scale factor in linear form	Thomas White
2018-02-27	Use linear scale when scaling against reference	Thomas White
2018-02-27	New residual to match Helen's work	Thomas White
2018-02-27	partialator: Add --reference	Thomas White
2018-02-27	Record residuals before and after refinement	Thomas White
2018-02-27	Don't allow profile radius to go negative	Thomas White
2018-02-27	Tweak reflection inclusion criteria	Thomas White
2018-02-27	Horrible restraint to keep algorithm from drifting too far	Thomas White
2018-02-27	Refine wavelength and make algorithm independent of scale	Thomas White
2018-02-27	Factorise applying new parameters to crystal, and prepare for refining radius	Thomas White
2018-02-27	Clean up angles	Thomas White
2018-02-27	Apply the final shifts	Thomas White
2018-02-27	Minimisation fixes	Thomas White
2018-02-27	Minimisation debug stuff	Thomas White
2018-02-27	Remove old code (and formatting)	Thomas White
2018-02-27	Use new reflection list in residual calculation	Thomas White
2018-02-27	New no-gradients minimiser for post-refinement	Thomas White
2018-02-27	partialator: Write spectrum graph	Thomas White
2018-02-27	New partiality model from Ginn et al.	Thomas White