| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-01-30 | GUI: Remove -et-al suffix from results name, if only one stream | Thomas White | |
| 2024-01-12 | indexamajig: Implement --max-mille-level | Thomas White | |
| 2024-01-12 | align_detector: Enumerate directory contents if necessary | Thomas White | |
| 2024-01-12 | GUI: Fix Millepede options | Thomas White | |
| 2024-01-12 | GUI: Copy geometry file into indexing job folder | Thomas White | |
| This could be used for indexing, but it seems more transparent to have the "real" filename in the script for auditing. The geometry copy will be used for detector alignment. The alternative - extracting the geometry from the stream - seems quite a lot more complicated. | |||
| 2024-01-11 | GUI: Write Millepede data into folder | Thomas White | |
| 2024-01-11 | GUI: Implement align_detector | Thomas White | |
| 2024-01-11 | GUI: Switch to GtkFileChooserDialog for detector alignment | Thomas White | |
| Rationale: the refinement is very quick, and the output geometry file name is central to the process. | |||
| 2024-01-10 | GUI: Skeleton task for detector alignment | Thomas White | |
| 2024-01-10 | indexamajig: Start implementing --max-mille-level | Thomas White | |
| 2024-01-10 | GUI: Track Millepede options through project | Thomas White | |
| Note that the indexamajig option --max-mille-level isn't implemented yet. | |||
| 2024-01-10 | CrystFELIndexingOpts: Add Millepede output options | Thomas White | |
| 2024-01-10 | GUI: Remove detector-shift | Thomas White | |
| The script has been replaced with align_detector --level=0. | |||
| 2024-01-05 | get_hkl: Free symmetry and output filename | Thomas White | |
| 2023-12-22 | Formatting | Thomas White | |
| 2023-12-22 | indexamajig: Add --asapo-consumer-timeout | Thomas White | |
| This also reduces the default timeout to 500 ms. | |||
| 2023-12-22 | indexamajig: Add --no-data-timeout | Thomas White | |
| 2023-11-07 | SLURM: Move all sbatch parameters into script | Thomas White | |
| This allows the user to re-run any job, if they want, or at least easily use the GUI's work as a template. | |||
| 2023-11-06 | SLURM: Expose reservation and QoS | Thomas White | |
| Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/87 | |||
| 2023-10-02 | align_detector: Try to find 'pede' next to align_detector binary | Thomas White | |
| Lots of things can go wrong here, in which case it falls back to the shell search path. | |||
| 2023-09-23 | indexamajig: Re-use the image data arrays | Thomas White | |
| We noticed that constant freeing and re-allocating the (potentially quite large) arrays resulted in much lower performance. Since we know that all images have the same data layout, we can safely re-use the arrays. This gives a large speedup. | |||
| 2023-09-23 | indexamajig: Add profile block for free-image | Thomas White | |
| 2023-09-21 | indexamajig: Increase buffer size for Mille filename | Thomas White | |
| With the prefix, it can get quite long. | |||
| 2023-09-20 | indexamajig: Add --mille-dir | Thomas White | |
| 2023-09-18 | Merge branch 'millepede' | Thomas White | |
| Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/3 Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/29 | |||
| 2023-09-13 | cell_explorer: Update "about" box | Thomas White | |
| 2023-09-13 | cell_explorer: Add "clear selection" | Thomas White | |
| 2023-08-30 | align_detector: Don't write constraints for fixed parameters | Thomas White | |
| This avoids a warning from Millepede, and means we no longer need "skipemptycons" - which will make it easier to spot future problems. | |||
| 2023-08-30 | align_detector: Add --out-of-plane | Thomas White | |
| 2023-08-28 | align_detector: stat() portability | Thomas White | |
| 2023-08-25 | align_detector: Output formatting | Thomas White | |
| 2023-08-25 | align_detector: Check for mixed-up Mille files | Thomas White | |
| 2023-08-24 | align_detector: Refine x,y position and z-rotation only | Thomas White | |
| 2023-08-24 | align_detector: Delete old results file before running pede | Thomas White | |
| It doesn't always return an error code. | |||
| 2023-08-24 | Use built-in Mille writer instead of wrapping C++ version | Thomas White | |
| 2023-07-28 | align_detector: Friendlier user output | Thomas White | |
| 2023-07-28 | Add (undocumented) Millepede option 'skipemptycons' | Thomas White | |
| 2023-07-28 | Add hierarchy constraints | Thomas White | |
| 2023-07-28 | align_detector: Decode labels and apply geometry corrections | Thomas White | |
| 2023-07-28 | align_detector: Begin parsing Pede output | Thomas White | |
| 2023-07-28 | No overall camera length shift | Thomas White | |
| 2023-07-28 | align_detector: No overall detector rotation | Thomas White | |
| 2023-07-28 | align_detector: Set up Millepede steering file for specified refinement level | Thomas White | |
| 2023-07-28 | Fix horribly confusing rotation labels | Thomas White | |
| 2023-07-28 | Move Mille stuff to separate file | Thomas White | |
| 2023-07-28 | adjust_detector: Don't show hierarchy | Thomas White | |
| Too much console spam... | |||
| 2023-07-28 | adjust_detector: Fix incorrect y shift | Thomas White | |
| 2023-07-28 | Implement data_template_rotate_group() | Thomas White | |
| 2023-07-28 | adjust_detector: Implement group translation | Thomas White | |
| 2023-07-28 | adjust_detector: Load geometry and show hierarchy | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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